RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 FOXN2P32314 431 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 MAN1A1P33908 653 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 SESN3P58005 492 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 FKBP1AP62942 108 aaKnown RBP11.52□□□□□ -0.57
UPF3A-212ENST00000619079 STAT4Q14765 748 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 GRIK5Q16478 980 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 PABPC1LQ4VXU2 614 aaKnown RBP11.52□□□□□ -0.57
UPF3A-212ENST00000619079 TCERG1LQ5VWI1 586 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 CEP128Q6ZU80 1094 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 ZNF365Q70YC5 407 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 STKLD1Q8NE28 680 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 OLFM3Q96PB7 478 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 ZNF184Q99676 751 aaPredicted RBP11.52□□□□□ -0.57
UPF3A-212ENST00000619079 NUDT12Q9BQG2 462 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 FGFBP2Q9BYJ0 223 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 UBE2OQ9C0C9 1292 aaKnown RBP11.52□□□□□ -0.57
UPF3A-212ENST00000619079 WNT8AQ9H1J5 351 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 SYNCQ9H7C4 482 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 GPRC5DQ9NZD1 345 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 STX18Q9P2W9 335 aaKnown RBP11.52□□□□□ -0.57
UPF3A-212ENST00000619079 BIN2Q9UBW5 565 aaPredicted RBP11.52□□□□□ -0.57
UPF3A-212ENST00000619079 HACL1Q9UJ83 578 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 ZFP69BQ9UJL9 534 aa11.52□□□□□ -0.57
UPF3A-212ENST00000619079 A0A1W2PRG0 241 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SLC37A4O43826 429 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 KRT18P05783 430 aaKnown RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 TSPY3P0CV98 308 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 TSPY8P0CW00 308 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 TNFAIP3P21580 790 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 KNOP1Q1ED39 458 aaKnown RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 KHDC1Q4VXA5 237 aaKnown RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 DAB2IPQ5VWQ8 1189 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 FYB2Q5VWT5 728 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 GPBP1Q86WP2 473 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 PHC3Q8NDX5 983 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 PLVAPQ9BX97 442 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 MMADHCQ9H3L0 296 aaPredicted RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 LRRC19Q9H756 370 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 RRAGCQ9HB90 399 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 PTPN22Q9Y2R2 807 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SUGT1Q9Y2Z0 365 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 EDF1O60869 148 aaKnown RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 ASMTLO95671 621 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 PLA2G4BP0C869 781 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 CYP2D6P10635 497 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 PDK4Q16654 411 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 TBC1D10BQ4KMP7 808 aaPredicted RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 EAPPQ56P03 285 aaPredicted RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 ARMC3Q5W041 872 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 PHLDB3Q6NSJ2 640 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 RHBDF2Q6PJF5 856 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SLC13A5Q86YT5 568 aaPredicted RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SLC35C1Q96A29 364 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 NSUN4Q96CB9 384 aaKnown RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SNF8Q96H20 258 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 HAPLN3Q96S86 360 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SYT11Q9BT88 431 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SPATA16Q9BXB7 569 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 THAP2Q9H0W7 228 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 DHX36Q9H2U1 1008 aaKnown RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 MKNK2Q9HBH9 465 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 AAASQ9NRG9 546 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 MCM9Q9NXL9 1143 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 DDX43Q9NXZ2 648 aaKnown RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SENP1Q9P0U3 644 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 SMG5Q9UPR3 1016 aaKnown RBP11.51□□□□□ -0.57
UPF3A-212ENST00000619079 GMEB1Q9Y692 573 aa11.51□□□□□ -0.57
UPF3A-212ENST00000619079 RASA4BC9J798 803 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ANKRD63C9JTQ0 380 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 C2CD2LO14523 706 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 CAPN9O14815 690 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ZSCAN9O15535 394 aaPredicted RBP11.5□□□□□ -0.57
UPF3A-212ENST00000619079 PRPF4O43172 522 aaKnown RBP eCLIP11.5□□□□□ -0.57
UPF3A-212ENST00000619079 RASA4O43374 803 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 MARCH6O60337 910 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 CBX6O95503 412 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 DNAJC3Q13217 504 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 CTTNQ14247 550 aaKnown RBP11.5□□□□□ -0.57
UPF3A-212ENST00000619079 SAMD7Q7Z3H4 446 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ARHGAP24Q8N264 748 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 OLIG1Q8TAK6 271 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 C10orf82Q8WW14 230 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 TEKT1Q969V4 418 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ARHGEF26Q96DR7 871 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 PLEKHG4BQ96PX9 1271 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 GMLQ99445 158 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 MYOZ2Q9NPC6 264 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 NMRK2Q9NPI5 230 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 NAALADL1Q9UQQ1 740 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 A8MXQ7 604 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 PSMG1O95456 288 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 TDP2O95551 362 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 EPHX2P34913 555 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 ADCY7P51828 1080 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 MECOMQ03112 1051 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 EVX2Q03828 476 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 MCL1Q07820 350 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 DLGAP5Q15398 846 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 CNPY1Q3B7I2 92 aa11.5□□□□□ -0.57
UPF3A-212ENST00000619079 TAF1BQ53T94 588 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms