RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 KIF12Q96FN5 646 aa21■□□□□ 0.95
UPF1-209ENST00000600310 FAM161BQ96MY7 647 aa21■□□□□ 0.95
UPF1-209ENST00000600310 TSG101Q99816 390 aa21■□□□□ 0.95
UPF1-209ENST00000600310 TMEM63CQ9P1W3 806 aa21■□□□□ 0.95
UPF1-209ENST00000600310 UBQLN1Q9UMX0 589 aaKnown RBP21■□□□□ 0.95
UPF1-209ENST00000600310 C2CD2Q9Y426 696 aa21■□□□□ 0.95
UPF1-209ENST00000600310 CASTOR2A6NHX0 329 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 NT5C1B-RDH14C9J2C7 533 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 FGF18O76093 207 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 ITGB1P05556 798 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 NFICP08651 508 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 CYP3A5P20815 502 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 NR2F2P24468 414 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 OR1G1P47890 313 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 PMS1P54277 932 aaKnown RBP20.99■□□□□ 0.95
UPF1-209ENST00000600310 WNT7BP56706 349 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 LRRC63Q05C16 580 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 SOX4Q06945 474 aaPredicted RBP20.99■□□□□ 0.95
UPF1-209ENST00000600310 SURF1Q15526 300 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 KLHL40Q2TBA0 621 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 ANKRD40Q6AI12 368 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 JADE1Q6IE81 842 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 KLHL10Q6JEL2 608 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 FOXR2Q6PJQ5 311 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 TMEM173Q86WV6 379 aaPredicted RBP20.99■□□□□ 0.95
UPF1-209ENST00000600310 NT5DC4Q86YG4 428 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 MLKLQ8NB16 471 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 RDH13Q8NBN7 331 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 C18orf25Q96B23 403 aaPredicted RBP20.99■□□□□ 0.95
UPF1-209ENST00000600310 UROC1Q96N76 676 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 COLEC11Q9BWP8 271 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 PRDM12Q9H4Q4 367 aa20.99■□□□□ 0.95
UPF1-209ENST00000600310 RFXAPO00287 272 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 XPOTO43592 962 aaKnown RBP20.98■□□□□ 0.95
UPF1-209ENST00000600310 LPXNO60711 386 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 NLRP12P59046 1061 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 CYP24A1Q07973 514 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 ADAM9Q13443 819 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 TMEM132DQ14C87 1099 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 SPATA1Q5VX52 437 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 SPPL3Q8TCT6 385 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 NELFBQ8WX92 580 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 SYAP1Q96A49 352 aaPredicted RBP20.98■□□□□ 0.95
UPF1-209ENST00000600310 DDX27Q96GQ7 796 aaKnown RBP20.98■□□□□ 0.95
UPF1-209ENST00000600310 IGSF21Q96ID5 467 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 MFSD14AQ96MC6 490 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 PAAF1Q9BRP4 392 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 PDE11AQ9HCR9 933 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 MARCH5Q9NX47 278 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 MTMR10Q9NXD2 777 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 CACNG4Q9UBN1 327 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 PRG3Q9Y2Y8 225 aaPredicted RBP20.98■□□□□ 0.95
UPF1-209ENST00000600310 A0A0C4DFX4 3053 aa20.98■□□□□ 0.95
UPF1-209ENST00000600310 RALGAPA2Q2PPJ7 1873 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 TRIM49BA6NDI0 452 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 MAPK13O15264 365 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 RPL9P32969 192 aaKnown RBP20.97■□□□□ 0.95
UPF1-209ENST00000600310 CASP4P49662 377 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 FKBP3Q00688 224 aaKnown RBP20.97■□□□□ 0.95
UPF1-209ENST00000600310 KRT17Q04695 432 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 UBE3AQ05086 875 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 PSMD6Q15008 389 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 CEP135Q66GS9 1140 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 TTI2Q6NXR4 508 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 CAVIN1Q6NZI2 390 aaKnown RBP20.97■□□□□ 0.95
UPF1-209ENST00000600310 ZC3H3Q8IXZ2 948 aaKnown RBP20.97■□□□□ 0.95
UPF1-209ENST00000600310 EFCAB13Q8IY85 973 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 BEST2Q8NFU1 509 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 GDPD5Q8WTR4 605 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 BCL7CQ8WUZ0 217 aaPredicted RBP20.97■□□□□ 0.95
UPF1-209ENST00000600310 TMEM169Q96HH4 297 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 GOLGA2P5Q9HBQ8 144 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 ALG13Q9NP73 1137 aaKnown RBP20.97■□□□□ 0.95
UPF1-209ENST00000600310 TUBGCP4Q9UGJ1 667 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 LZTS1Q9Y250 596 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 FRMD4BQ9Y2L6 1034 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 CITO14578 2027 aa20.97■□□□□ 0.95
UPF1-209ENST00000600310 LAMA2P24043 3122 aaKnown RBP20.96■□□□□ 0.95
UPF1-209ENST00000600310 BICDL2A1A5D9 508 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 TMEM189-UBE2V1I3L0A0 370 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 CETN3O15182 167 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 GRM6O15303 877 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 LRPAP1P30533 357 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 PAK1Q13153 545 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 UPP1Q16831 310 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 DCLRE1AQ6PJP8 1040 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 RABGGTAQ92696 567 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 LMAN2LQ9H0V9 348 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 PUF60Q9UHX1 559 aaKnown RBP20.96■□□□□ 0.95
UPF1-209ENST00000600310 CTNND2Q9UQB3 1225 aa20.96■□□□□ 0.95
UPF1-209ENST00000600310 KIAA1671Q9BY89 1806 aa20.95■□□□□ 0.94
UPF1-209ENST00000600310 AKAP3O75969 853 aa20.95■□□□□ 0.94
UPF1-209ENST00000600310 CLCNKBP51801 687 aa20.95■□□□□ 0.94
UPF1-209ENST00000600310 SKOR2Q2VWA4 1001 aaPredicted RBP20.95■□□□□ 0.94
UPF1-209ENST00000600310 DPCR1Q3MIW9 517 aa20.95■□□□□ 0.94
UPF1-209ENST00000600310 DDX53Q86TM3 631 aaKnown RBP20.95■□□□□ 0.94
UPF1-209ENST00000600310 POF1BQ8WVV4 589 aa20.95■□□□□ 0.94
UPF1-209ENST00000600310 GUCD1Q96NT3 240 aa20.95■□□□□ 0.94
UPF1-209ENST00000600310 CDX2Q99626 313 aaPredicted RBP20.95■□□□□ 0.94
UPF1-209ENST00000600310 DUSP9Q99956 384 aaKnown RBP20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms