RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 ZDHHC7Q9NXF8 308 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 FNIP2Q9P278 1114 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 ZMIZ1Q9ULJ6 1067 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 PCDHA12Q9UN75 941 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 SSX2IPQ9Y2D8 614 aa9.57□□□□□ -0.88
SHKBP1-220ENST00000599716 SF3B1O75533 1304 aaKnown RBP eCLIP9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 STK36Q9NRP7 1315 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 AKAP13Q12802 2813 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 PFKFB2O60825 505 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 KINO60870 393 aaKnown RBP9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 DGAT1O75907 488 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 SPATA31C1P0DKV0 1188 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 OR1D2P34982 312 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 TUSC3Q13454 348 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 NAB2Q15742 525 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 TMEM132AQ24JP5 1023 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 SLC5A9Q2M3M2 681 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 PPM1LQ5SGD2 360 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 AXDND1Q5T1B0 1012 aaPredicted RBP9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 EXOC8Q8IYI6 725 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 SLFN12Q8IYM2 578 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 SECISBP2LQ93073 1101 aaKnown RBP9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 BORCS6Q96GS4 357 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 PLA2G2FQ9BZM2 168 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 TM6SF1Q9BZW5 370 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 ANKEF1Q9NU02 776 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 SPATA6Q9NWH7 488 aaPredicted RBP9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 DNMT3BQ9UBC3 853 aaKnown RBP9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 STK39Q9UEW8 545 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 CDH7Q9ULB5 785 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 PPME1Q9Y570 386 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 PATJQ8NI35 1801 aa9.56□□□□□ -0.88
SHKBP1-220ENST00000599716 SLC30A4O14863 429 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 SPTLC1O15269 473 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 NEMFO60524 1076 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 CDKL5O76039 1030 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 LYPLA2O95372 231 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 XBP1P17861 261 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 MCM7P33993 719 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 BRCC3P46736 316 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 CSTF1Q05048 431 aaKnown RBP9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 ECM1Q16610 540 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 ME3Q16798 604 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 SLC44A4Q53GD3 710 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 LIN9Q5TKA1 542 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 PHLDB3Q6NSJ2 640 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 ELMSAN1Q6PJG2 1045 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 CD300LGQ6UXG3 332 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 CATSPER3Q86XQ3 398 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 NPAS3Q8IXF0 933 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 DIS3L2Q8IYB7 885 aaKnown RBP9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 HACE1Q8IYU2 909 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 CEP120Q8N960 986 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 C3orf58Q8NDZ4 430 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 NETO1Q8TDF5 533 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 HDAC7Q8WUI4 952 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 PIK3R5Q8WYR1 880 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 MCRS1Q96EZ8 462 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 MTMR9Q96QG7 549 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 RHOBTB2Q9BYZ6 727 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 FZD8Q9H461 694 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 SLC2A4RGQ9NR83 387 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 DPP7Q9UHL4 492 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 CDY1Q9Y6F8 540 aa9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 ANKRD17O75179 2603 aaKnown RBP9.55□□□□□ -0.88
SHKBP1-220ENST00000599716 TEP1Q99973 2627 aaKnown RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 MYO9AB2RTY4 2548 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 PIEZO2Q9H5I5 2752 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 CELSR3Q9NYQ7 3312 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 KANSL1LA0AUZ9 987 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 FAM170BA6NMN3 283 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 PAPLNO95428 1278 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 PRKCBP05771 671 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 THP07101 528 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 CEBPBP17676 345 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 TARSP26639 723 aaKnown RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 TKTP29401 623 aaKnown RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 CLCNKBP51801 687 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 ARPP19P56211 112 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 STARD6P59095 220 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 OSTNP61366 133 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 POU5F1BQ06416 359 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 SOX4Q06945 474 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 ST3GAL1Q11201 340 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 PRPF4BQ13523 1007 aaKnown RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 NBR1Q14596 966 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 MLF2Q15773 248 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 CDCA2Q69YH5 1023 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 CYP26C1Q6V0L0 522 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 TPRG1Q6ZUI0 275 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 KDF1Q8NAX2 398 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 NSUN7Q8NE18 718 aaKnown RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 NXPE3Q969Y0 559 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 TCEAL4Q96EI5 215 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 NAP1L4Q99733 375 aaKnown RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 NFKBIZQ9BYH8 718 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 PRMT7Q9NVM4 692 aaPredicted RBP9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 USP18Q9UMW8 372 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms