RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 PABPC1LQ4VXU2 614 aaKnown RBP23.27■■□□□ 1.32
PNKP-212ENST00000599454 ST13P5Q8NFI4 369 aaPredicted RBP23.27■■□□□ 1.32
PNKP-212ENST00000599454 ITFG1Q8TB96 612 aa23.27■■□□□ 1.32
PNKP-212ENST00000599454 TNFSF13BQ9Y275 285 aa23.27■■□□□ 1.32
PNKP-212ENST00000599454 CDY1Q9Y6F8 540 aa23.27■■□□□ 1.32
PNKP-212ENST00000599454 PHLPP2Q6ZVD8 1323 aa23.27■■□□□ 1.32
PNKP-212ENST00000599454 CEP250Q9BV73 2442 aa23.27■■□□□ 1.31
PNKP-212ENST00000599454 WDR87Q6ZQQ6 2873 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 K7ERI5 159 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 CCT6AP40227 531 aaKnown RBP23.26■■□□□ 1.31
PNKP-212ENST00000599454 MAGEA9P43362 315 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 TRAPPC10P48553 1259 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 FXR2P51116 673 aaKnown RBP eCLIP23.26■■□□□ 1.31
PNKP-212ENST00000599454 CLCNKBP51801 687 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 GUCY1B3Q02153 619 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 ST3GAL1Q11201 340 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 SNW1Q13573 536 aaKnown RBP23.26■■□□□ 1.31
PNKP-212ENST00000599454 GLRA4Q5JXX5 417 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 TTC38Q5R3I4 469 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 NT5DC1Q5TFE4 455 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 NPAS3Q8IXF0 933 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 DDX27Q96GQ7 796 aaKnown RBP23.26■■□□□ 1.31
PNKP-212ENST00000599454 KIFC3Q9BVG8 833 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 BCO2Q9BYV7 579 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 BHMT2Q9H2M3 363 aa23.26■■□□□ 1.31
PNKP-212ENST00000599454 TOPORSQ9NS56 1045 aaPredicted RBP23.26■■□□□ 1.31
PNKP-212ENST00000599454 DNMT3BQ9UBC3 853 aaKnown RBP23.26■■□□□ 1.31
PNKP-212ENST00000599454 GLULP15104 373 aa23.25■■□□□ 1.31
PNKP-212ENST00000599454 YARSP54577 528 aaKnown RBP23.25■■□□□ 1.31
PNKP-212ENST00000599454 SLC44A4Q53GD3 710 aa23.25■■□□□ 1.31
PNKP-212ENST00000599454 LLPHQ9BRT6 129 aaKnown RBP23.25■■□□□ 1.31
PNKP-212ENST00000599454 CCDC94Q9BW85 323 aaPredicted RBP23.25■■□□□ 1.31
PNKP-212ENST00000599454 AVENQ9NQS1 362 aaPredicted RBP23.25■■□□□ 1.31
PNKP-212ENST00000599454 SLC38A7Q9NVC3 462 aa23.25■■□□□ 1.31
PNKP-212ENST00000599454 GDE1Q9NZC3 331 aa23.25■■□□□ 1.31
PNKP-212ENST00000599454 F5P12259 2224 aa23.25■■□□□ 1.31
PNKP-212ENST00000599454 TKTP29401 623 aaKnown RBP23.24■■□□□ 1.31
PNKP-212ENST00000599454 GRM5P41594 1212 aa23.24■■□□□ 1.31
PNKP-212ENST00000599454 ZNF528Q3MIS6 628 aa23.24■■□□□ 1.31
PNKP-212ENST00000599454 XKR4Q5GH76 650 aa23.24■■□□□ 1.31
PNKP-212ENST00000599454 CD300LGQ6UXG3 332 aa23.24■■□□□ 1.31
PNKP-212ENST00000599454 RAB34Q9BZG1 259 aa23.24■■□□□ 1.31
PNKP-212ENST00000599454 HCFC1R1Q9NWW0 138 aa23.24■■□□□ 1.31
PNKP-212ENST00000599454 NOL7Q9UMY1 257 aaKnown RBP23.24■■□□□ 1.31
PNKP-212ENST00000599454 MRPS23Q9Y3D9 190 aaKnown RBP23.24■■□□□ 1.31
PNKP-212ENST00000599454 SMIM28A0A1B0GU29 152 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 PDIA5Q14554 519 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 ECM1Q16610 540 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 SLC8B1Q6J4K2 584 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 FBXO18Q8NFZ0 1043 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 ZNF461Q8TAF7 563 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 KXD1Q9BQD3 176 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 TMEM134Q9H6X4 195 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 LRWD1Q9UFC0 647 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 FBXO4Q9UKT5 387 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 LIMCH1Q9UPQ0 1083 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 KIAA1024Q9UPX6 916 aa23.23■■□□□ 1.31
PNKP-212ENST00000599454 ARHGEF37A1IGU5 675 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 ECI2O75521 394 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 NEFLP07196 543 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 HMGN5P82970 282 aaKnown RBP23.22■■□□□ 1.31
PNKP-212ENST00000599454 GNL2Q13823 731 aaKnown RBP23.22■■□□□ 1.31
PNKP-212ENST00000599454 UBXN2BQ14CS0 331 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 ALKAL1Q6UXT8 129 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 RUBCNQ92622 972 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 NELL2Q99435 816 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 ACO2Q99798 780 aaKnown RBP23.22■■□□□ 1.31
PNKP-212ENST00000599454 MRPL4Q9BYD3 311 aaKnown RBP23.22■■□□□ 1.31
PNKP-212ENST00000599454 GOLGA2P5Q9HBQ8 144 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 LTB4R2Q9NPC1 389 aa23.22■■□□□ 1.31
PNKP-212ENST00000599454 SPATA6Q9NWH7 488 aaPredicted RBP23.22■■□□□ 1.31
PNKP-212ENST00000599454 DCHS1Q96JQ0 3298 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 SYN3O14994 580 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 LAMTOR5O43504 91 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 KINO60870 393 aaKnown RBP23.21■■□□□ 1.31
PNKP-212ENST00000599454 LRRN2O75325 713 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 LRG1P02750 347 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 RHOP08100 348 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 PTPN2P17706 415 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 ELF1P32519 619 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 BRCC3P46736 316 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 DMP1Q13316 513 aaPredicted RBP23.21■■□□□ 1.31
PNKP-212ENST00000599454 ZNF568Q3ZCX4 644 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 MAML2Q8IZL2 1156 aaPredicted RBP23.21■■□□□ 1.31
PNKP-212ENST00000599454 C4orf32Q8N8J7 132 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 C3orf58Q8NDZ4 430 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 ING5Q8WYH8 240 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 HINFPQ9BQA5 517 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 CDT1Q9H211 546 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 POLD4Q9HCU8 107 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 PTPRHQ9HD43 1115 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 DDX19AQ9NUU7 478 aaKnown RBP23.21■■□□□ 1.31
PNKP-212ENST00000599454 COL4A3Q01955 1670 aa23.21■■□□□ 1.31
PNKP-212ENST00000599454 GPR179Q6PRD1 2367 aa23.2■■□□□ 1.3
PNKP-212ENST00000599454 FAM170BA6NMN3 283 aa23.2■■□□□ 1.3
PNKP-212ENST00000599454 CCDC169A6NNP5 214 aa23.2■■□□□ 1.3
PNKP-212ENST00000599454 NCAM2O15394 837 aa23.2■■□□□ 1.3
PNKP-212ENST00000599454 ABLIM3O94929 683 aa23.2■■□□□ 1.3
PNKP-212ENST00000599454 IGFBP6P24592 240 aaPredicted RBP23.2■■□□□ 1.3
PNKP-212ENST00000599454 NPTX2P47972 431 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms