RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 WDR6Q9NNW5 1121 aaKnown RBP11.5□□□□□ -0.57
LIG1-213ENST00000596672 FOXD4L1Q9NU39 408 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 FBXO2Q9UK22 296 aaPredicted RBP11.5□□□□□ -0.57
LIG1-213ENST00000596672 FBXW11Q9UKB1 542 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 MTMR6Q9Y217 621 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 USTQ9Y2C2 406 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 HCN4Q9Y3Q4 1203 aa11.5□□□□□ -0.57
LIG1-213ENST00000596672 A0A087X0B3 334 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 TMEM189-UBE2V1I3L0A0 370 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 ZMYND10O75800 440 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 MCF2P10911 925 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 HARSP12081 509 aaKnown RBP11.49□□□□□ -0.57
LIG1-213ENST00000596672 KCNE1P15382 129 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 NPR3P17342 541 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 MARCKSP29966 332 aaPredicted RBP11.49□□□□□ -0.57
LIG1-213ENST00000596672 MCM2P49736 904 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 GUCY2FP51841 1108 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 ZNF131P52739 623 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 NCKAP1LP55160 1127 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 DMP1Q13316 513 aaPredicted RBP11.49□□□□□ -0.57
LIG1-213ENST00000596672 DHX8Q14562 1220 aaKnown RBP11.49□□□□□ -0.57
LIG1-213ENST00000596672 BMS1Q14692 1282 aaKnown RBP11.49□□□□□ -0.57
LIG1-213ENST00000596672 PSMD5Q16401 504 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 TMEM132AQ24JP5 1023 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 DCLRE1AQ6PJP8 1040 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 MPZL3Q6UWV2 235 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 HACE1Q8IYU2 909 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 KCNN1Q92952 543 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 DRC1Q96MC2 740 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 ADPGKQ9BRR6 497 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 MRPL4Q9BYD3 311 aaKnown RBP11.49□□□□□ -0.57
LIG1-213ENST00000596672 RHOBTB2Q9BYZ6 727 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 RAB34Q9BZG1 259 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 KCNK12Q9HB15 430 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 TUBGCP4Q9UGJ1 667 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 SORCS3Q9UPU3 1222 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 NR2E1Q9Y466 385 aa11.49□□□□□ -0.57
LIG1-213ENST00000596672 SF3B1O75533 1304 aaKnown RBP eCLIP11.49□□□□□ -0.574e-6■■■■■ 133.7
LIG1-213ENST00000596672 MYH15Q9Y2K3 1946 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 VPS37CA5D8V6 355 aaPredicted RBP11.48□□□□□ -0.57
LIG1-213ENST00000596672 ANKRD63C9JTQ0 380 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 PPEF2O14830 753 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 PI15O43692 258 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 B3GAT3O94766 335 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 VNN2O95498 520 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 NMT1P30419 496 aaKnown RBP11.48□□□□□ -0.57
LIG1-213ENST00000596672 AVPR2P30518 371 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 OR1D2P34982 312 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 MCL1Q07820 350 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 MRPL58Q14197 206 aaKnown RBP11.48□□□□□ -0.57
LIG1-213ENST00000596672 ZBTB6Q15916 424 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 CCDC149Q6ZUS6 474 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 GPBP1Q86WP2 473 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 TMEM105Q8N8V8 129 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 TDRD5Q8NAT2 981 aaKnown RBP11.48□□□□□ -0.57
LIG1-213ENST00000596672 TMEM87AQ8NBN3 555 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 ZSWIM2Q8NEG5 633 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 SMG7Q92540 1137 aaKnown RBP11.48□□□□□ -0.57
LIG1-213ENST00000596672 RAD54LQ92698 747 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 FGFBP2Q9BYJ0 223 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 PRKD2Q9BZL6 878 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 C17orf75Q9HAS0 396 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 HCFC1R1Q9NWW0 138 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 CNTN3Q9P232 1028 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 MTRRQ9UBK8 725 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 STK39Q9UEW8 545 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 KIF3AQ9Y496 699 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.48□□□□□ -0.57
LIG1-213ENST00000596672 STK24Q9Y6E0 443 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 CLUHO75153 1309 aa11.48□□□□□ -0.57
LIG1-213ENST00000596672 TTC26A0AVF1 554 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 NR1I2O75469 434 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 TOM1L1O75674 476 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 SEC24AO95486 1093 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 CXCL8P10145 99 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 WNT7BP56706 349 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 KCNA1Q09470 495 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 RAB33AQ14088 237 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 ZC2HC1CQ53FD0 456 aaPredicted RBP11.47□□□□□ -0.57
LIG1-213ENST00000596672 CWF19L1Q69YN2 538 aaKnown RBP11.47□□□□□ -0.57
LIG1-213ENST00000596672 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.47□□□□□ -0.57
LIG1-213ENST00000596672 HAUS6Q7Z4H7 955 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 BRAPQ7Z569 592 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 GRASPQ7Z6J2 395 aaPredicted RBP11.47□□□□□ -0.57
LIG1-213ENST00000596672 ITFG1Q8TB96 612 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 HDAC7Q8WUI4 952 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 FAM84AQ96KN4 292 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 MFSD14AQ96MC6 490 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 ACAP3Q96P50 834 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 USP28Q96RU2 1077 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 CCDC94Q9BW85 323 aaPredicted RBP11.47□□□□□ -0.57
LIG1-213ENST00000596672 PLEKHA4Q9H4M7 779 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 UPF2Q9HAU5 1272 aaKnown RBP11.47□□□□□ -0.57
LIG1-213ENST00000596672 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.47□□□□□ -0.57
LIG1-213ENST00000596672 SSX2IPQ9Y2D8 614 aa11.47□□□□□ -0.57
LIG1-213ENST00000596672 KRBA1A5PL33 1030 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 MYMKA6NI61 221 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 PODXLO00592 558 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 CCL16O15467 120 aa11.46□□□□□ -0.57
LIG1-213ENST00000596672 C1RP00736 705 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms