RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 GRIN2CQ14957 1233 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 PSMD6Q15008 389 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 SNRNP35Q16560 246 aaKnown RBP11.49□□□□□ -0.57
LIG1-210ENST00000596332 KYAT1Q16773 422 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 SPATA1Q5VX52 437 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 KCNT2Q6UVM3 1135 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 HS2ST1Q7LGA3 356 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 RNF168Q8IYW5 571 aaPredicted RBP11.49□□□□□ -0.57
LIG1-210ENST00000596332 SLC39A11Q8N1S5 342 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 LRRC43Q8N309 656 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 OR5B17Q8NGF7 314 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 PARD3BQ8TEW8 1205 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 RSPH1Q8WYR4 309 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 HSD3B7Q9H2F3 369 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 ZNF576Q9H609 170 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 ASB7Q9H672 318 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 RPF1Q9H9Y2 349 aaKnown RBP11.49□□□□□ -0.57
LIG1-210ENST00000596332 CERS4Q9HA82 394 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 KANSL3Q9P2N6 904 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 TUBGCP4Q9UGJ1 667 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 MSRAQ9UJ68 235 aa11.49□□□□□ -0.57
LIG1-210ENST00000596332 ZNF233A6NK53 670 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 LRRIQ3A6PVS8 624 aaPredicted RBP11.48□□□□□ -0.57
LIG1-210ENST00000596332 CALUO43852 315 aaPredicted RBP11.48□□□□□ -0.57
LIG1-210ENST00000596332 KIF20AO95235 890 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 CYP3A5P20815 502 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 NR2F2P24468 414 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 LRPAP1P30533 357 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 MATR3P43243 847 aaKnown RBP eCLIP11.48□□□□□ -0.57
LIG1-210ENST00000596332 LRRC63Q05C16 580 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 TUSC3Q13454 348 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 ADGRE1Q14246 886 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 NCAPHQ15003 741 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 UPP1Q16831 310 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 KLHL10Q6JEL2 608 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 GPR153Q6NV75 609 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 C15orf39Q6ZRI6 1047 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 TAS1R1Q7RTX1 841 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 APBB1IPQ7Z5R6 666 aaPredicted RBP11.48□□□□□ -0.57
LIG1-210ENST00000596332 CD302Q8IX05 232 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 KLHL23Q8NBE8 558 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 GOLGA5Q8TBA6 731 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 SPPL3Q8TCT6 385 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 TGS1Q96RS0 853 aaKnown RBP11.48□□□□□ -0.57
LIG1-210ENST00000596332 TMEM175Q9BSA9 504 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 MRPL9Q9BYD2 267 aaKnown RBP11.48□□□□□ -0.57
LIG1-210ENST00000596332 SLC28A3Q9HAS3 691 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 KIAA1586Q9HCI6 787 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 TOPORSQ9NS56 1045 aaPredicted RBP11.48□□□□□ -0.57
LIG1-210ENST00000596332 RBAKQ9NYW8 714 aaPredicted RBP11.48□□□□□ -0.57
LIG1-210ENST00000596332 SIX4Q9UIU6 781 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 RWDD2AQ9UIY3 292 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 CTNND2Q9UQB3 1225 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 DERAQ9Y315 318 aa11.48□□□□□ -0.57
LIG1-210ENST00000596332 PDCD11Q14690 1871 aaKnown RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 TMEM265A0A087WTH1 108 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 CASTOR2A6NHX0 329 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 H3BNC9 293 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 PIRO00625 290 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 PSMA7O14818 248 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 SPTLC1O15269 473 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 GRM6O15303 877 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 EXOC3O60645 756 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 LRRN2O75325 713 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 CST3P01034 146 aaPredicted RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 C4BPAP04003 597 aaKnown RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 ERCC5P28715 1186 aaPredicted RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 CLCNKBP51801 687 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 YARSP54577 528 aaKnown RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 FKBP3Q00688 224 aaKnown RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 PLCB3Q01970 1234 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 C1QBPQ07021 282 aaKnown RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 PPP3CAQ08209 521 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 PAK1Q13153 545 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 SKOR2Q2VWA4 1001 aaPredicted RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 PPP2R2DQ66LE6 453 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 LMBRD2Q68DH5 695 aaPredicted RBP11.47□□□□□ -0.57
LIG1-210ENST00000596332 Q7L0L9 218 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 FILIP1Q7Z7B0 1213 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 HACE1Q8IYU2 909 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 ABI1Q8IZP0 508 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 C1orf127Q8N9H9 656 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 TMC2Q8TDI7 906 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 IGSF21Q96ID5 467 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 TSPAN18Q96SJ8 248 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 INTS13Q9NVM9 706 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 C2CD2Q9Y426 696 aa11.47□□□□□ -0.57
LIG1-210ENST00000596332 RALGAPA2Q2PPJ7 1873 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 SYCE3A1L190 88 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 TMEM189-UBE2V1I3L0A0 370 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 LILRB3O75022 631 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 ZC3H11AO75152 810 aaKnown RBP eCLIP11.46□□□□□ -0.57
LIG1-210ENST00000596332 FGF18O76093 207 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 KIF4AO95239 1232 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 IL18RAPO95256 599 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 VNN1O95497 513 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 ALDH2P05091 517 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 RB1P06400 928 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 LAG3P18627 525 aa11.46□□□□□ -0.57
LIG1-210ENST00000596332 PTMSP20962 102 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms