RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 TMX3Q96JJ7 454 aa16.21■□□□□ 0.19
PNKP-202ENST00000593706 KXD1Q9BQD3 176 aa16.21■□□□□ 0.19
PNKP-202ENST00000593706 RPP25Q9BUL9 199 aaKnown RBP16.21■□□□□ 0.19
PNKP-202ENST00000593706 CDY1Q9Y6F8 540 aa16.21■□□□□ 0.19
PNKP-202ENST00000593706 TCHHQ07283 1943 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 RALGAPA1Q6GYQ0 2036 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 U2AF2P26368 475 aaKnown RBP eCLIP16.2■□□□□ 0.184e-8■□□□□ 9.6
PNKP-202ENST00000593706 CCT6AP40227 531 aaKnown RBP16.2■□□□□ 0.18
PNKP-202ENST00000593706 ORC2Q13416 577 aaPredicted RBP16.2■□□□□ 0.18
PNKP-202ENST00000593706 SNW1Q13573 536 aaKnown RBP16.2■□□□□ 0.18
PNKP-202ENST00000593706 RAB33AQ14088 237 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 ZNF174Q15697 407 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 PABPC1LQ4VXU2 614 aaKnown RBP16.2■□□□□ 0.18
PNKP-202ENST00000593706 C1orf210Q8IVY1 113 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 ITFG1Q8TB96 612 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 ING5Q8WYH8 240 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 KIFAP3Q92845 792 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 UROC1Q96N76 676 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 BHMT2Q9H2M3 363 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 UPF2Q9HAU5 1272 aaKnown RBP16.2■□□□□ 0.18
PNKP-202ENST00000593706 HCFC1R1Q9NWW0 138 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 DLGAP2Q9P1A6 1054 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 MTRRQ9UBK8 725 aa16.2■□□□□ 0.18
PNKP-202ENST00000593706 TMEM189-UBE2V1I3L0A0 370 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 TRAPPC3O43617 180 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 SP9P0CG40 484 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 FGFR3P22607 806 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 CLCNKBP51801 687 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 STARD6P59095 220 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 UBXN2BQ14CS0 331 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 MLF2Q15773 248 aaPredicted RBP16.19■□□□□ 0.18
PNKP-202ENST00000593706 UVSSAQ2YD98 709 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 TTC38Q5R3I4 469 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 PPP1R10Q96QC0 940 aaKnown RBP16.19■□□□□ 0.18
PNKP-202ENST00000593706 BCO2Q9BYV7 579 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 GOLGA2P5Q9HBQ8 144 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 TOPORSQ9NS56 1045 aaPredicted RBP16.19■□□□□ 0.18
PNKP-202ENST00000593706 PHLPP2Q6ZVD8 1323 aa16.19■□□□□ 0.18
PNKP-202ENST00000593706 KANSL1LA0AUZ9 987 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 I3L4J1 428 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 LRRN2O75325 713 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 POU2F2P09086 479 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 MUTP22033 750 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 TKTP29401 623 aaKnown RBP16.18■□□□□ 0.18
PNKP-202ENST00000593706 TRAPPC10P48553 1259 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 YARSP54577 528 aaKnown RBP16.18■□□□□ 0.18
PNKP-202ENST00000593706 PFKPQ01813 784 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 ZNF568Q3ZCX4 644 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 ANKS3Q6ZW76 656 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 NPAS3Q8IXF0 933 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 KIAA2013Q8IYS2 634 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 C4orf32Q8N8J7 132 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 FAM184AQ8NB25 1140 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 DDX27Q96GQ7 796 aaKnown RBP16.18■□□□□ 0.18
PNKP-202ENST00000593706 CCDC94Q9BW85 323 aaPredicted RBP16.18■□□□□ 0.18
PNKP-202ENST00000593706 POLD4Q9HCU8 107 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 SPATA6Q9NWH7 488 aaPredicted RBP16.18■□□□□ 0.18
PNKP-202ENST00000593706 DAXXQ9UER7 740 aaPredicted RBP16.18■□□□□ 0.18
PNKP-202ENST00000593706 LRWD1Q9UFC0 647 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 MRPS23Q9Y3D9 190 aaKnown RBP16.18■□□□□ 0.18
PNKP-202ENST00000593706 COL4A2P08572 1712 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 KIF26AQ9ULI4 1882 aaPredicted RBP16.18■□□□□ 0.18
PNKP-202ENST00000593706 F5P12259 2224 aa16.18■□□□□ 0.18
PNKP-202ENST00000593706 ZNF638Q14966 1978 aaKnown RBP16.17■□□□□ 0.18
PNKP-202ENST00000593706 NUP210Q8TEM1 1887 aaPredicted RBP16.17■□□□□ 0.18
PNKP-202ENST00000593706 CCDC169A6NNP5 214 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 K7ERI5 159 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 GLULP15104 373 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 TOB1P50616 345 aaPredicted RBP16.17■□□□□ 0.18
PNKP-202ENST00000593706 OSTNP61366 133 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 PRKCQQ04759 706 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 UPP1Q16831 310 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 NT5DC1Q5TFE4 455 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 DNMT3BQ9UBC3 853 aaKnown RBP16.17■□□□□ 0.18
PNKP-202ENST00000593706 KCNH3Q9ULD8 1083 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 NOL7Q9UMY1 257 aaKnown RBP16.17■□□□□ 0.18
PNKP-202ENST00000593706 KIAA1024Q9UPX6 916 aa16.17■□□□□ 0.18
PNKP-202ENST00000593706 PRRG1O14668 218 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 LAMTOR5O43504 91 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 KINO60870 393 aaKnown RBP16.16■□□□□ 0.18
PNKP-202ENST00000593706 LRG1P02750 347 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 ELF1P32519 619 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 BRCC3P46736 316 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 MCM2P49736 904 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 FXR2P51116 673 aaKnown RBP eCLIP16.16■□□□□ 0.18
PNKP-202ENST00000593706 DMP1Q13316 513 aaPredicted RBP16.16■□□□□ 0.18
PNKP-202ENST00000593706 NBR1Q14596 966 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 SLC44A4Q53GD3 710 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 RSPO2Q6UXX9 243 aaPredicted RBP16.16■□□□□ 0.18
PNKP-202ENST00000593706 RTL10Q7L3V2 364 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 CEP120Q8N960 986 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 C3orf58Q8NDZ4 430 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 SNX29Q8TEQ0 813 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 RUBCNQ92622 972 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 BACH2Q9BYV9 841 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 RAB34Q9BZG1 259 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 DDX19AQ9NUU7 478 aaKnown RBP16.16■□□□□ 0.18
PNKP-202ENST00000593706 SLC38A7Q9NVC3 462 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 TNFSF13BQ9Y275 285 aa16.16■□□□□ 0.18
PNKP-202ENST00000593706 BACE2Q9Y5Z0 518 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms