RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 SEM1Q6ZVN7 128 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 UBE3BQ7Z3V4 1068 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 SYT12Q8IV01 421 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 GRAMD1CQ8IYS0 662 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 MVB12AQ96EY5 273 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 MRGPRX4Q96LA9 322 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 LRGUKQ96M69 825 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 DMRTA2Q96SC8 542 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 MAP3K14Q99558 947 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 C11orf54Q9H0W9 315 aaPredicted RBP5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 CALCOCO1Q9P1Z2 691 aa5.91□□□□□ -1.46
SMCHD1-204ENST00000581226 TCRBV7S2A1N4TA0A589 114 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 DRGXA6NNA5 263 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 LEFTY2O00292 366 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 KIAA0391O15091 583 aaKnown RBP5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 AP1G1O43747 822 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 RECQL4O94761 1208 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 AMHP03971 560 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 INSRRP14616 1297 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 HSPA6P17066 643 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 APOBEC3AP31941 199 aaPredicted RBP5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 CHN2P52757 468 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 PTTG1IPP53801 180 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 NHLH2Q02577 135 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 TLE1Q04724 770 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 GTF2H3Q13889 308 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 RABL3Q5HYI8 236 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 ATAT1Q5SQI0 421 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 MED25Q71SY5 747 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 DCBLD1Q8N8Z6 715 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 C3orf20Q8ND61 904 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 HPS3Q969F9 1004 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 FAM193BQ96PV7 902 aaPredicted RBP5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 PLEKHG4BQ96PX9 1271 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 VRK1Q99986 396 aaPredicted RBP5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 MAN1C1Q9NR34 630 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 PARPBPQ9NWS1 579 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 POLHQ9Y253 713 aa5.9□□□□□ -1.46
SMCHD1-204ENST00000581226 LRRC14BA6NHZ5 514 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 FAM20BO75063 409 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 SCAF4O95104 1147 aaKnown RBP5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 FTLP02792 175 aaPredicted RBP5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 SMARCA1P28370 1054 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 KRTAP10-2P60368 255 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 ZNF267Q14586 743 aaPredicted RBP5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 FAM102BQ5T8I3 360 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 CPT1CQ8TCG5 803 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 CLIP3Q96DZ5 547 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 AIFM3Q96NN9 605 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 SLC12A5Q9H2X9 1139 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 ZNF703Q9H7S9 590 aaPredicted RBP5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 NMRK2Q9NPI5 230 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 FBXO34Q9NWN3 711 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 FAM30AQ9NZY2 134 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 CEP72Q9P209 647 aa5.89□□□□□ -1.47
SMCHD1-204ENST00000581226 TRIM24O15164 1050 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 GRM6O15303 877 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 SLC16A6O15403 523 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 TSPAN6O43657 245 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 C1SP09871 688 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 U2AF1L5P0DN76 240 aaPredicted RBP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 MTHFD1P11586 935 aaKnown RBP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 ALAS1P13196 640 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 MALP21145 153 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 RNASE9P60153 205 aaKnown RBP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 U2AF1Q01081 240 aaKnown RBP eCLIP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 FOXE3Q13461 319 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 SNAPC2Q13487 334 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 TOB2Q14106 344 aaPredicted RBP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 PABPC1LQ4VXU2 614 aaKnown RBP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 CCDC157Q569K6 752 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 DACT2Q5SW24 774 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 CXorf57Q6NSI4 855 aaKnown RBP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 NLGN4YQ8NFZ3 816 aaPredicted RBP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 RGMAQ96B86 450 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 DCLRE1CQ96SD1 692 aaKnown RBP5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 GSTO2Q9H4Y5 243 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 KMT5AQ9NQR1 393 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 PCDHA3Q9Y5H8 950 aa5.88□□□□□ -1.47
SMCHD1-204ENST00000581226 GRXCR1A8MXD5 290 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 DIRC3C9JPN6 131 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 PRPF3O43395 683 aaKnown RBP5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 ARIH2O95376 493 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 ITGB1P05556 798 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 CD1AP06126 327 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 SBK3P0C264 359 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 LPOP22079 712 aaPredicted RBP5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 SLC6A2P23975 617 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 MAP2K6P52564 334 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 DGCR2P98153 550 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 NOGQ13253 232 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 ZXDCQ2QGD7 858 aaPredicted RBP5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 EPM2AIP1Q7L775 607 aaPredicted RBP5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 SLC35G2Q8TBE7 412 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 DIS3LQ8TF46 1054 aaKnown RBP5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 TSR2Q969E8 191 aaKnown RBP5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 C1GALT1C1Q96EU7 318 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 REXO4Q9GZR2 422 aaKnown RBP5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 ANLNQ9NQW6 1124 aa5.87□□□□□ -1.47
SMCHD1-204ENST00000581226 TRPM5Q9NZQ8 1165 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms