RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 RAB39AQ14964 217 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 UBE3BQ7Z3V4 1068 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 TTC7BQ86TV6 843 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 PLXDC1Q8IUK5 500 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 CLPTM1LQ96KA5 538 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 C11orf54Q9H0W9 315 aaPredicted RBP8.3□□□□□ -1.08
SS18-214ENST00000580003 NRDE2Q9H7Z3 1164 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 SLC2A4RGQ9NR83 387 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 SLC23A1Q9UHI7 598 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 HS3ST3A1Q9Y663 406 aa8.3□□□□□ -1.08
SS18-214ENST00000580003 AHRRA9YTQ3 701 aa8.29□□□□□ -1.08
SS18-214ENST00000580003 RNASET2O00584 256 aaKnown RBP8.29□□□□□ -1.08
SS18-214ENST00000580003 KIAA0391O15091 583 aaKnown RBP8.29□□□□□ -1.08
SS18-214ENST00000580003 ZSCAN20P17040 1043 aaPredicted RBP8.29□□□□□ -1.08
SS18-214ENST00000580003 MAKP20794 623 aa8.29□□□□□ -1.08
SS18-214ENST00000580003 MCM7P33993 719 aa8.29□□□□□ -1.08
SS18-214ENST00000580003 ABHD18Q0P651 414 aa8.29□□□□□ -1.08
SS18-214ENST00000580003 HAS1Q92839 578 aa8.29□□□□□ -1.08
SS18-214ENST00000580003 TCF7L1Q9HCS4 588 aa8.29□□□□□ -1.08
SS18-214ENST00000580003 FAM30AQ9NZY2 134 aa8.29□□□□□ -1.08
SS18-214ENST00000580003 ATP11BQ9Y2G3 1177 aa8.29□□□□□ -1.08
SS18-214ENST00000580003 USP15Q9Y4E8 981 aaPredicted RBP8.29□□□□□ -1.08
SS18-214ENST00000580003 E2F8A0AVK6 867 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 FSHBP01225 129 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 ITGB1P05556 798 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 PTTG1IPP53801 180 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 FAM102AQ5T9C2 384 aaPredicted RBP8.28□□□□□ -1.08
SS18-214ENST00000580003 ANKRD13AQ8IZ07 590 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 Q8N1X5 172 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 NLGN4YQ8NFZ3 816 aaPredicted RBP8.28□□□□□ -1.08
SS18-214ENST00000580003 IFI44Q8TCB0 444 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 ZNF768Q9H5H4 540 aaKnown RBP8.28□□□□□ -1.08
SS18-214ENST00000580003 MMRN2Q9H8L6 949 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 MAN1C1Q9NR34 630 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 ANKRD6Q9Y2G4 727 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 CHST2Q9Y4C5 530 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 PCDHB1Q9Y5F3 818 aa8.28□□□□□ -1.08
SS18-214ENST00000580003 TCRBV7S2A1N4TA0A589 114 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 GAGE12BA1L429 117 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 GAGE12HA6NDE8 117 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 ZNF185O15231 689 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 NARSO43776 548 aaKnown RBP8.27□□□□□ -1.09
SS18-214ENST00000580003 ADH4P08319 380 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 MTHFD1P11586 935 aaKnown RBP8.27□□□□□ -1.09
SS18-214ENST00000580003 PDCP20941 246 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 MCL1Q07820 350 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 PDCD4Q53EL6 469 aaKnown RBP8.27□□□□□ -1.09
SS18-214ENST00000580003 DACT2Q5SW24 774 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 FNDC7Q5VTL7 733 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 TSHZ3Q63HK5 1081 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 RHOT2Q8IXI1 618 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 CALCOCO1Q9P1Z2 691 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 FZD1Q9UP38 647 aa8.27□□□□□ -1.09
SS18-214ENST00000580003 PF4V1P10720 104 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 LAG3P18627 525 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 EPHB1P54762 984 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 MXRA7P84157 204 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 PIN1Q13526 163 aaPredicted RBP8.26□□□□□ -1.09
SS18-214ENST00000580003 TIGD2Q4W5G0 525 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 ODR4Q5SWX8 454 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 AGAP9Q5VTM2 703 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 FITM2Q8N6M3 262 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 NSUN6Q8TEA1 469 aaKnown RBP8.26□□□□□ -1.09
SS18-214ENST00000580003 LENG9Q96B70 501 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 CLIP3Q96DZ5 547 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 MRGPRX4Q96LA9 322 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 NUP88Q99567 741 aaPredicted RBP8.26□□□□□ -1.09
SS18-214ENST00000580003 GSTO2Q9H4Y5 243 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 AKIP1Q9NQ31 210 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 FBXO34Q9NWN3 711 aa8.26□□□□□ -1.09
SS18-214ENST00000580003 NCR1O76036 304 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 HLA-DOAP06340 250 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 POU2F2P09086 479 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 SLC6A2P23975 617 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 AKAP5P24588 427 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 FAM189BP81408 668 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 PABPC1LQ4VXU2 614 aaKnown RBP8.25□□□□□ -1.09
SS18-214ENST00000580003 THEMIS2Q5TEJ8 643 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 METRNLQ641Q3 311 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 USP45Q70EL2 814 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 OR56A1Q8NGH5 318 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 TMPRSS5Q9H3S3 457 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 GPRC5BQ9NZH0 403 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 SRRDQ9UH36 339 aa8.25□□□□□ -1.09
SS18-214ENST00000580003 GRM6O15303 877 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 ABLIM3O94929 683 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 S100BP04271 92 aaPredicted RBP8.24□□□□□ -1.09
SS18-214ENST00000580003 NR4A1P22736 598 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 ZNF280AP59817 542 aaPredicted RBP8.24□□□□□ -1.09
SS18-214ENST00000580003 DSC2Q02487 901 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 TLE1Q04724 770 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 PLEKHG6Q3KR16 790 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 IGFL4Q6B9Z1 124 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 DCBLD1Q8N8Z6 715 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 NEU1Q99519 415 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 PACSIN1Q9BY11 444 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 TEX101Q9BY14 249 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 RNPEPQ9H4A4 650 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 ZNF180Q9UJW8 692 aa8.24□□□□□ -1.09
SS18-214ENST00000580003 POLHQ9Y253 713 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms