RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CCDC157Q569K6 752 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 FIGNQ5HY92 759 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 VPS53Q5VIR6 699 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 RETSATQ6NUM9 610 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 HIBCHQ6NVY1 386 aaPredicted RBP6.7□□□□□ -1.34
VPS53-219ENST00000576019 PGBD2Q6P3X8 592 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 PDXDC1Q6P996 788 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 ESPNLQ6ZVH7 1005 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 SYTL1Q8IYJ3 562 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 AGGF1Q8N302 714 aaeCLIP6.7□□□□□ -1.34
VPS53-219ENST00000576019 ZNF655Q8N720 491 aaPredicted RBP6.7□□□□□ -1.34
VPS53-219ENST00000576019 PLBD2Q8NHP8 589 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 TSPEARQ8WU66 669 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 DLG3Q92796 817 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 TMEM41AQ96HV5 264 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 C16orf92Q96LL3 132 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 PTCHD1Q96NR3 888 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 SEC62Q99442 399 aaKnown RBP6.7□□□□□ -1.34
VPS53-219ENST00000576019 CDK19Q9BWU1 502 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 TTLL2Q9BWV7 592 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 LRRC27Q9C0I9 530 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 KCTD10Q9H3F6 313 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 SEMA6CQ9H3T2 930 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 IFT122Q9HBG6 1241 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 IFT80Q9P2H3 777 aaPredicted RBP6.7□□□□□ -1.34
VPS53-219ENST00000576019 THEGQ9P2T0 379 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 PADI4Q9UM07 663 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 AFG3L2Q9Y4W6 797 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 TJP1Q07157 1748 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 ACACBO00763 2458 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 CD163L1Q9NR16 1453 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 C7orf72A4D263 438 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 SERPINB2P05120 415 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 NFICP08651 508 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 PDIA3P30101 505 aaKnown RBP6.69□□□□□ -1.34
VPS53-219ENST00000576019 BCAR1P56945 870 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 RAB1AP62820 205 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 MRPS5P82675 430 aaKnown RBP6.69□□□□□ -1.34
VPS53-219ENST00000576019 CAP1Q01518 475 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 TUSC3Q13454 348 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 COL9A3Q14050 684 aaPredicted RBP6.69□□□□□ -1.34
VPS53-219ENST00000576019 NFIXQ14938 502 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 SFRP5Q5T4F7 317 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 CEP68Q76N32 757 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 C7orf31Q8N865 590 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 CD99L2Q8TCZ2 262 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.69□□□□□ -1.34
VPS53-219ENST00000576019 NRG4Q8WWG1 115 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 RPGRQ92834 1020 aaKnown RBP6.69□□□□□ -1.34
VPS53-219ENST00000576019 KAT5Q92993 513 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 FERMT2Q96AC1 680 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 APIPQ96GX9 242 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 RAX2Q96IS3 184 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 SERINC2Q96SA4 455 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 CDADC1Q9BWV3 514 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 ZMAT3Q9HA38 289 aaKnown RBP6.69□□□□□ -1.34
VPS53-219ENST00000576019 ATP6V0A4Q9HBG4 840 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 PRDM5Q9NQX1 630 aaPredicted RBP6.69□□□□□ -1.34
VPS53-219ENST00000576019 KCNH7Q9NS40 1196 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 NOL7Q9UMY1 257 aaKnown RBP6.69□□□□□ -1.34
VPS53-219ENST00000576019 DNAH14Q0VDD8 3507 aa6.69□□□□□ -1.34
VPS53-219ENST00000576019 FAM208BQ5VWN6 2430 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 NAV2Q8IVL1 2488 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 PRSS38A1L453 326 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 PRR33A8MZF0 331 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 ELL2O00472 640 aaPredicted RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 LEFTY1O75610 366 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 APOL3O95236 402 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 CNOT4O95628 575 aaKnown RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 FTLP02792 175 aaPredicted RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 HARSP12081 509 aaKnown RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 PREPP48147 710 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 USP11P51784 963 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 MAP2K6P52564 334 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 LGALS4P56470 323 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 INSM1Q01101 510 aaPredicted RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 PRKG1Q13976 671 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 POSTNQ15063 836 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 EPHA7Q15375 998 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 CATSPEREQ5SY80 951 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 KLHDC7AQ5VTJ3 777 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 AGAP9Q5VTM2 703 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 CDPF1Q6NVV7 123 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 CACNA2D3Q8IZS8 1091 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 DTWD1Q8N5C7 304 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 NAT16Q8N8M0 369 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 ATG16L2Q8NAA4 619 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 PIP4K2CQ8TBX8 421 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 TRAPPC12Q8WVT3 735 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 USP13Q92995 863 aaPredicted RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 RGMAQ96B86 450 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 TMEM120AQ9BXJ8 343 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 ACE2Q9BYF1 805 aaPredicted RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 MAGEH1Q9H213 219 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 TRIT1Q9H3H1 467 aaKnown RBP6.68□□□□□ -1.34
VPS53-219ENST00000576019 PNPLA8Q9NP80 782 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 KMT5AQ9NQR1 393 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 LRFN1Q9P244 771 aa6.68□□□□□ -1.34
VPS53-219ENST00000576019 ATP23Q9Y6H3 246 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms