RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CLCNKBP51801 687 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 RAB33AQ14088 237 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 PDIA5Q14554 519 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 ANGPT1Q15389 498 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 PSMD5Q16401 504 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 ATF7IP2Q5U623 682 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 PARM1Q6UWI2 310 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.4□□□□□ -1.22
VPS53-213ENST00000572334 CEP57Q86XR8 500 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 MAML2Q8IZL2 1156 aaPredicted RBP7.4□□□□□ -1.22
VPS53-213ENST00000572334 STAMQ92783 540 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 NXPE3Q969Y0 559 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 DDX27Q96GQ7 796 aaKnown RBP7.4□□□□□ -1.22
VPS53-213ENST00000572334 CCDC43Q96MW1 224 aaKnown RBP7.4□□□□□ -1.22
VPS53-213ENST00000572334 ACO2Q99798 780 aaKnown RBP7.4□□□□□ -1.22
VPS53-213ENST00000572334 RTP3Q9BQQ7 232 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 RUSC1Q9BVN2 902 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 CDT1Q9H211 546 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 TBC1D17Q9HA65 648 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 SLC2A4RGQ9NR83 387 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 DDX19AQ9NUU7 478 aaKnown RBP7.4□□□□□ -1.22
VPS53-213ENST00000572334 HCFC1R1Q9NWW0 138 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS53-213ENST00000572334 ARHGAP28Q9P2N2 729 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 DNMT3BQ9UBC3 853 aaKnown RBP7.4□□□□□ -1.22
VPS53-213ENST00000572334 MTRRQ9UBK8 725 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 DPP7Q9UHL4 492 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 FBXL21Q9UKT6 434 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 KIAA1024Q9UPX6 916 aa7.4□□□□□ -1.22
VPS53-213ENST00000572334 TCHHQ07283 1943 aa7.4□□□□□ -1.23
VPS53-213ENST00000572334 SPTBN2O15020 2390 aa7.4□□□□□ -1.23
VPS53-213ENST00000572334 OBSL1O75147 1896 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 SMIM28A0A1B0GU29 152 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 CCL16O15467 120 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 LRRN2O75325 713 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 GABBR2O75899 941 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 DCNP07585 359 aaKnown RBP7.39□□□□□ -1.23
VPS53-213ENST00000572334 HNRNPA1P09651 372 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS53-213ENST00000572334 LIG1P18858 919 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 FSHRP23945 695 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 TKTP29401 623 aaKnown RBP7.39□□□□□ -1.23
VPS53-213ENST00000572334 OR1D2P34982 312 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 CCT6AP40227 531 aaKnown RBP7.39□□□□□ -1.23
VPS53-213ENST00000572334 GRM5P41594 1212 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 BRCC3P46736 316 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 NPTX2P47972 431 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 TRAPPC10P48553 1259 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 EFNA5P52803 228 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 PEX3P56589 373 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 STARD6P59095 220 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 GPC5P78333 572 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 CREMQ03060 361 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 PTGDRQ13258 359 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 MRPL58Q14197 206 aaKnown RBP7.39□□□□□ -1.23
VPS53-213ENST00000572334 PPP2R5AQ15172 486 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 SAFBQ15424 915 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS53-213ENST00000572334 SLC5A9Q2M3M2 681 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 DCAF4L1Q3SXM0 396 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 C8orf34Q49A92 452 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 AXDND1Q5T1B0 1012 aaPredicted RBP7.39□□□□□ -1.23
VPS53-213ENST00000572334 PHLDB3Q6NSJ2 640 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 RINT1Q6NUQ1 792 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 DCLRE1AQ6PJP8 1040 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 C1orf186Q6ZWK4 172 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 ERMNQ8TAM6 284 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 DEPTORQ8TB45 409 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 LRRC15Q8TF66 581 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 KIFAP3Q92845 792 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 FGF13Q92913 245 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 ZBTB45Q96K62 511 aaPredicted RBP7.39□□□□□ -1.23
VPS53-213ENST00000572334 PNMA5Q96PV4 448 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 DDX23Q9BUQ8 820 aaKnown RBP7.39□□□□□ -1.23
VPS53-213ENST00000572334 PLA2G2FQ9BZM2 168 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 FOXQ1Q9C009 403 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 HAPLN2Q9GZV7 340 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 TMEM134Q9H6X4 195 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 PIDD1Q9HB75 910 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 ARHGEF3Q9NR81 526 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.39□□□□□ -1.23
VPS53-213ENST00000572334 LRWD1Q9UFC0 647 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 CDH7Q9ULB5 785 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 TNFSF13BQ9Y275 285 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 ATG2BQ96BY7 2078 aa7.39□□□□□ -1.23
VPS53-213ENST00000572334 NUP210Q8TEM1 1887 aaPredicted RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 PHLPP2Q6ZVD8 1323 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 WDR27A2RRH5 827 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 K7ERI5 159 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 HIP1RO75146 1068 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 B3GAT3O94766 335 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 ABLIM3O94929 683 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 SEC24AO95486 1093 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 HMGN5P82970 282 aaKnown RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 ROR1Q01973 937 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 ELAVL2Q12926 359 aaKnown RBP7.38□□□□□ -1.23
VPS53-213ENST00000572334 GSE1Q14687 1217 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 UVSSAQ2YD98 709 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 PRSS36Q5K4E3 855 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 PPM1LQ5SGD2 360 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 HYIQ5T013 277 aa7.38□□□□□ -1.23
VPS53-213ENST00000572334 HAUS3Q68CZ6 603 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms