RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 TMEM130Q8N3G9 435 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 KIFAP3Q92845 792 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 NXPE3Q969Y0 559 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 DDX27Q96GQ7 796 aaKnown RBP9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 SNX27Q96L92 541 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 PPP1R10Q96QC0 940 aaKnown RBP9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 PLIN2Q99541 437 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 LLPHQ9BRT6 129 aaKnown RBP9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 TCHPQ9BT92 498 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 RUSC1Q9BVN2 902 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 TARS2Q9BW92 718 aaKnown RBP9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 CDT1Q9H211 546 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 DNMT3BQ9UBC3 853 aaKnown RBP9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 NOL7Q9UMY1 257 aaKnown RBP9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 SIT1Q9Y3P8 196 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 MYO15AQ9UKN7 3530 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 ZMYM2Q9UBW7 1377 aa9.46□□□□□ -0.9
CTDNEP1-203ENST00000570385 MYH15Q9Y2K3 1946 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 NOTCH4Q99466 2003 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 SMIM28A0A1B0GU29 152 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 SLC16A4O15374 487 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 XYLBO75191 536 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 C1RP00736 705 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 HNRNPA1P09651 372 aaKnown RBP eCLIP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 GLULP15104 373 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 CD72P21854 359 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 NPTX2P47972 431 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 YARSP54577 528 aaKnown RBP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 UPP1Q16831 310 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 PABPC1LQ4VXU2 614 aaKnown RBP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 SEZ6Q53EL9 994 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 TAS1R3Q7RTX0 852 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 KCNK18Q7Z418 384 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 DAW1Q8N136 415 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 MCRS1Q96EZ8 462 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 ZBTB45Q96K62 511 aaPredicted RBP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 ZMAT2Q96NC0 199 aaKnown RBP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 ACO2Q99798 780 aaKnown RBP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 CCDC94Q9BW85 323 aaPredicted RBP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 KMT5AQ9NQR1 393 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 SLC2A4RGQ9NR83 387 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 MTRRQ9UBK8 725 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 DNM3Q9UQ16 869 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 TNFSF13BQ9Y275 285 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 MRPS23Q9Y3D9 190 aaKnown RBP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 MTF2Q9Y483 593 aaPredicted RBP9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 OTOGLQ3ZCN5 2332 aa9.45□□□□□ -0.9
CTDNEP1-203ENST00000570385 CEP250Q9BV73 2442 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 VPS13AQ96RL7 3174 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 TMEM189-UBE2V1I3L0A0 370 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 PODXLO00592 558 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 MUTP22033 750 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 GRM5P41594 1212 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 TRAPPC10P48553 1259 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 HMGN5P82970 282 aaKnown RBP9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 ROR1Q01973 937 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 SPAG1Q07617 926 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 DMP1Q13316 513 aaPredicted RBP9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 ORC2Q13416 577 aaPredicted RBP9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 UBXN2BQ14CS0 331 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 SLC5A9Q2M3M2 681 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 SLC44A4Q53GD3 710 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 VARS2Q5ST30 1063 aaKnown RBP9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 KRT79Q5XKE5 535 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 MCTP1Q6DN14 999 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 PHLDB3Q6NSJ2 640 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 PDXDC1Q6P996 788 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 POTEHQ6S545 545 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 ANKS3Q6ZW76 656 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 APBB1IPQ7Z5R6 666 aaPredicted RBP9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 NPAS3Q8IXF0 933 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 IGSF22Q8N9C0 903 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 PJA1Q8NG27 643 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 C18orf25Q96B23 403 aaPredicted RBP9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 ACAP3Q96P50 834 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 KIF2CQ99661 725 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 MRPL4Q9BYD3 311 aaKnown RBP9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 PLA2G2FQ9BZM2 168 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 DLGAP2Q9P1A6 1054 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 ANKFY1Q9P2R3 1169 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 SPTBN2O15020 2390 aa9.44□□□□□ -0.9
CTDNEP1-203ENST00000570385 PHLPP2Q6ZVD8 1323 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 PRRG1O14668 218 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 MEFVO15553 781 aaPredicted RBP9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 TRAPPC3O43617 180 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 LMNAP02545 664 aaKnown RBP9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 LRG1P02750 347 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 RHOP08100 348 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 SP9P0CG40 484 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 CEBPBP17676 345 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 U2AF2P26368 475 aaKnown RBP eCLIP9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 HOXA9P31269 272 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 ELF1P32519 619 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 CACNB1Q02641 598 aaPredicted RBP9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 MAPK7Q13164 816 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 PDIA5Q14554 519 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 MLF2Q15773 248 aaPredicted RBP9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 UVSSAQ2YD98 709 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 RINT1Q6NUQ1 792 aa9.43□□□□□ -0.9
CTDNEP1-203ENST00000570385 ALKAL1Q6UXT8 129 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms