RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 TSSK1BQ9BXA7 367 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 CHST7Q9NS84 486 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 MRPL11Q9Y3B7 192 aaKnown RBP12.09□□□□□ -0.47
CLN3-238ENST00000569430 H3BRJ5 948 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 CREB3O43889 395 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 STAM2O75886 525 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 NUDT17P0C025 328 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 KRT10P13645 584 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 CALB2P22676 271 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 KRT39Q6A163 491 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 PRUNE1Q86TP1 453 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 SLC47A2Q86VL8 602 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 LRRC57Q8N9N7 239 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 CEP70Q8NHQ1 597 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 MORC4Q8TE76 937 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 CHURC1Q8WUH1 139 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 ATXN2LQ8WWM7 1075 aaKnown RBP12.09□□□□□ -0.47
CLN3-238ENST00000569430 SREK1Q8WXA9 508 aaKnown RBP12.09□□□□□ -0.47
CLN3-238ENST00000569430 TSNARE1Q96NA8 513 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 RPS6KC1Q96S38 1066 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 FAM213AQ9BRX8 229 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 RIOX1Q9H6W3 641 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 SCN11AQ9UI33 1791 aa12.08□□□□□ -0.47
CLN3-238ENST00000569430 TCP10L2B9ZVM9 353 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 ZBED4O75132 1171 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 POLGP54098 1239 aaPredicted RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 ARL4CP56559 192 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 HADHQ16836 314 aaKnown RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 RASSF3Q86WH2 238 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 C1orf131Q8NDD1 294 aaKnown RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 TRIM11Q96F44 468 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 RNPEPL1Q9HAU8 725 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 TRAF3IP3Q9Y228 551 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 ARFGEF2Q9Y6D5 1785 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 TCRBV7S2A1N4TA0A589 114 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 SLURP2P0DP57 97 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 PRKCIP41743 596 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 RRP1BQ14684 758 aaKnown RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 HIF1AQ16665 826 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 WLSQ5T9L3 541 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 SNX30Q5VWJ9 437 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 PALB2Q86YC2 1186 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 PPP4R1Q8TF05 950 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 STK32AQ8WU08 396 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 CEP170P1Q96L14 293 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 TTC25Q96NG3 672 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 CBWD1Q9BRT8 395 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 PAGR1Q9BTK6 254 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 CDCA7Q9BWT1 371 aaPredicted RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 KIAA1683Q9H0B3 1180 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 ZCWPW1Q9H0M4 648 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 DCLRE1BQ9H816 532 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 DNAJC18Q9H819 358 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLN3-238ENST00000569430 HSPBP1Q9NZL4 362 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 UVRAGQ9P2Y5 699 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 PCSK1NQ9UHG2 260 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 SMG5Q9UPR3 1016 aaKnown RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 DAGLAQ9Y4D2 1042 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 IPO5O00410 1097 aaKnown RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 MSH4O15457 936 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 C21orf2O43822 256 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 ATP4AP20648 1035 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 ALDH18A1P54886 795 aaKnown RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 RABGAP1LQ5R372 815 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 WDR78Q5VTH9 848 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 NLRX1Q86UT6 975 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 TTC16Q8NEE8 873 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 CKAP2Q8WWK9 683 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 DHX38Q92620 1227 aaKnown RBP12.08□□□□□ -0.48
CLN3-238ENST00000569430 RMDN2Q96LZ7 410 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 CCPG1Q9ULG6 757 aa12.08□□□□□ -0.48
CLN3-238ENST00000569430 CFLARO15519 480 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 CALCAP01258 141 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 CHKAP35790 457 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 GPSM2P81274 684 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 PDE1CQ14123 709 aaPredicted RBP12.07□□□□□ -0.48
CLN3-238ENST00000569430 DARS2Q6PI48 645 aaKnown RBP12.07□□□□□ -0.48
CLN3-238ENST00000569430 C3orf62Q6ZUJ4 267 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 FBXL13Q8NEE6 735 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 TBC1D10AQ9BXI6 508 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 SHCBP1LQ9BZQ2 653 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 KCTD10Q9H3F6 313 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 SEL1LQ9UBV2 794 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 IGSF9BQ9UPX0 1349 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 IQANK1A0A1B0GTG1 560 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 DENND3A2RUS2 1198 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 ATP9AO75110 1047 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 RNF8O76064 485 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 UNC5CO95185 931 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 EIF2AK2P19525 551 aaKnown RBP12.07□□□□□ -0.48
CLN3-238ENST00000569430 STAT2P52630 851 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 PDE1BQ01064 536 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 NXNQ6DKJ4 435 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 SCARA5Q6ZMJ2 495 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 TTC8Q8TAM2 541 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 CSRNP1Q96S65 589 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 TISP43B9A030 160 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 SAT1P21673 171 aa12.07□□□□□ -0.48
CLN3-238ENST00000569430 AP2B1P63010 937 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms