RNA–Protein interactions for RNA: ENST00000568691.5

VPS9D1-207, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 838 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-207ENST00000568691 TEX2Q8IWB9 1127 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 DIS3L2Q8IYB7 885 aaKnown RBP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 DAGLBQ8NCG7 672 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 EIF2AQ9BY44 585 aaKnown RBP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 NIFKQ9BYG3 293 aaKnown RBP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 SMOC1Q9H4F8 434 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 LMAN1LQ9HAT1 526 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 DISC1Q9NRI5 854 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 NRBP2Q9NSY0 501 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 SUCLA2Q9P2R7 463 aaPredicted RBP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 HES2Q9Y543 173 aa13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 V9GY48 417 aaPredicted RBP13.21□□□□□ -0.29
VPS9D1-207ENST00000568691 FREM2Q5SZK8 3169 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 RALGAPA1Q6GYQ0 2036 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 SMCO2A6NFE2 343 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 TAF4O00268 1085 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 C8AP07357 584 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 MLH1P40692 756 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 CCR3P51677 355 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 USP41Q3LFD5 358 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 MTERF2Q49AM1 385 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 RILPL1Q5EBL4 403 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 MCRS1Q96EZ8 462 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 NLRP4Q96MN2 994 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 PAAF1Q9BRP4 392 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 BARHL2Q9NY43 387 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 RCOR1Q9UKL0 485 aa13.2□□□□□ -0.3
VPS9D1-207ENST00000568691 WDR64B1ANS9 1081 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 MAFO75444 373 aaPredicted RBP13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 BMP15O95972 392 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 ZNF806P0C7X5 589 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 HOXA9P31269 272 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 CXCL12P48061 93 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 TRAPPC10P48553 1259 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 GRM2Q14416 872 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 FOXD4L6Q3SYB3 417 aaPredicted RBP13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 AASDHQ4L235 1098 aaPredicted RBP13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 PRR16Q569H4 304 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 PSAPL1Q6NUJ1 521 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 FOXD4L3Q6VB84 417 aaPredicted RBP13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 MAP4K3Q8IVH8 894 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 LNX1Q8TBB1 728 aaPredicted RBP13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 GPT2Q8TD30 523 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 DNASE1L2Q92874 299 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 ARRDC1-AS1Q9H2J1 176 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 UNC45AQ9H3U1 944 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 GDPD2Q9HCC8 539 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 RBM12Q9NTZ6 932 aaKnown RBP13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 VPS54Q9P1Q0 977 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 LHX6Q9UPM6 363 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 MRPS17Q9Y2R5 130 aaKnown RBP13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 SAMM50Q9Y512 469 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 IPPQ9Y573 584 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 GREB1Q4ZG55 1949 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 IGSF10Q6WRI0 2623 aa13.19□□□□□ -0.3
VPS9D1-207ENST00000568691 HELZ2Q9BYK8 2649 aaKnown RBP13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 AXIN1O15169 862 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 MSH4O15457 936 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 PAPSS2O95340 614 aaPredicted RBP13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 POU2F2P09086 479 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 CEBPBP17676 345 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 IGFBP6P24592 240 aaPredicted RBP13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 CIITAP33076 1130 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 CDC42EP1Q00587 391 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 NPY5RQ15761 445 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 PLA2G2CQ5R387 149 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 PPM1LQ5SGD2 360 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 HEATR6Q6AI08 1181 aaKnown RBP13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 FAM173BQ6P4H8 233 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 B3GNT9Q6UX72 402 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 Q6ZS52 159 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 LONP2Q86WA8 852 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 ZNF579Q8NAF0 562 aaKnown RBP13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 SLC7A14Q8TBB6 771 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 USP28Q96RU2 1077 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 IER2Q9BTL4 223 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 INO80BQ9C086 356 aaPredicted RBP13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 GJB4Q9NTQ9 266 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 ADAM28Q9UKQ2 775 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 KCNH3Q9ULD8 1083 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 POLIQ9UNA4 740 aa13.18□□□□□ -0.3
VPS9D1-207ENST00000568691 GOLGA6L4A6NEF3 574 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 ARNTLO00327 626 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 ITGA4P13612 1032 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 RAP1GAPP47736 663 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 SETQ01105 290 aaPredicted RBP13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 PTGDRQ13258 359 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 PABPC1LQ4VXU2 614 aaKnown RBP13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 TCEAL6Q6IPX3 200 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 ANO5Q75V66 913 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 LINC00301Q8NCQ3 95 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 BICD2Q8TD16 824 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 PIK3R5Q8WYR1 880 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 FAM3CQ92520 227 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 TNFRSF25Q93038 417 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 TCEAL3Q969E4 200 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 ELSPBP1Q96BH3 223 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 COLEC11Q9BWP8 271 aa13.17□□□□□ -0.3
VPS9D1-207ENST00000568691 ADAM33Q9BZ11 813 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms