RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CUL1Q13616 776 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 CCDC26Q8TAB7 109 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 COPS5Q92905 334 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 UVRAGQ9P2Y5 699 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 GJA5P36382 358 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 TNFSF9P41273 254 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 KCTD2Q14681 263 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 IER5Q5VY09 327 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 CCDC62Q6P9F0 684 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 USP50Q70EL3 339 aaPredicted RBP21.74■■□□□ 1.07
CLN3-230ENST00000568076 MAATS1Q7Z4T9 603 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 LRRC71Q8N4P6 559 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 UBL4BQ8N7F7 174 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.74■■□□□ 1.075e-8■■■■■ 65.3
CLN3-230ENST00000568076 SEC14L1Q92503 715 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 CNOT8Q9UFF9 292 aaKnown RBP21.74■■□□□ 1.07
CLN3-230ENST00000568076 PCDHB2Q9Y5E7 798 aa21.74■■□□□ 1.07
CLN3-230ENST00000568076 IGKV6-21A0A0C4DH24 114 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 CLSTN1O94985 981 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 LAMTOR4Q0VGL1 99 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 CUL2Q13617 745 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 HLTFQ14527 1009 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLN3-230ENST00000568076 PLCB4Q15147 1175 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 UMODL1Q5DID0 1318 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 CDCA2Q69YH5 1023 aaPredicted RBP21.73■■□□□ 1.07
CLN3-230ENST00000568076 KCNV1Q6PIU1 500 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 ZPBP2Q6X784 338 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 MORC4Q8TE76 937 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 ATP8B4Q8TF62 1192 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 L3MBTL3Q96JM7 780 aaPredicted RBP21.73■■□□□ 1.07
CLN3-230ENST00000568076 NAP1L3Q99457 506 aaPredicted RBP21.73■■□□□ 1.07
CLN3-230ENST00000568076 MPHOSPH6Q99547 160 aaKnown RBP21.73■■□□□ 1.07
CLN3-230ENST00000568076 WNT8AQ9H1J5 351 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 PPME1Q9Y570 386 aa21.73■■□□□ 1.07
CLN3-230ENST00000568076 NOP56O00567 594 aaKnown RBP21.72■■□□□ 1.07
CLN3-230ENST00000568076 CLDN3O15551 220 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 DAPK3O43293 454 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 OSBPP22059 807 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 EPHX2P34913 555 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 FASTKD5Q7L8L6 764 aaKnown RBP21.72■■□□□ 1.07
CLN3-230ENST00000568076 PLPPR4Q7Z2D5 763 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 ZDHHC14Q8IZN3 488 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 SPATA33Q96N06 139 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 SRGAP2CP0DJJ0 459 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 HSPA9P38646 679 aaKnown RBP21.72■■□□□ 1.07
CLN3-230ENST00000568076 EFNA5P52803 228 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 WDR78Q5VTH9 848 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 ZBTB33Q86T24 672 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 MCOLN2Q8IZK6 566 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 RNF149Q8NC42 400 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 ZC3H15Q8WU90 426 aaKnown RBP21.72■■□□□ 1.07
CLN3-230ENST00000568076 ARL8AQ96BM9 186 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 TRIM51Q9BSJ1 452 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 SYT17Q9BSW7 474 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 NUB1Q9Y5A7 615 aa21.72■■□□□ 1.07
CLN3-230ENST00000568076 CFHP08603 1231 aa21.71■■□□□ 1.07
CLN3-230ENST00000568076 PYGMP11217 842 aa21.71■■□□□ 1.07
CLN3-230ENST00000568076 CTNNA1P35221 906 aaKnown RBP21.71■■□□□ 1.07
CLN3-230ENST00000568076 TTMPQ5BVD1 217 aa21.71■■□□□ 1.07
CLN3-230ENST00000568076 ZNF677Q86XU0 584 aa21.71■■□□□ 1.07
CLN3-230ENST00000568076 BRSK2Q8IWQ3 736 aa21.71■■□□□ 1.07
CLN3-230ENST00000568076 DHX37Q8IY37 1157 aaKnown RBP21.71■■□□□ 1.07
CLN3-230ENST00000568076 TRAPPC12Q8WVT3 735 aa21.71■■□□□ 1.07
CLN3-230ENST00000568076 CPA5Q8WXQ8 436 aa21.71■■□□□ 1.07
CLN3-230ENST00000568076 ACO2Q99798 780 aaKnown RBP21.71■■□□□ 1.07
CLN3-230ENST00000568076 MRPL4Q9BYD3 311 aaKnown RBP21.71■■□□□ 1.07
CLN3-230ENST00000568076 PDGFCQ9NRA1 345 aa21.71■■□□□ 1.07
CLN3-230ENST00000568076 GOLGA6CA6NDK9 693 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 GOLGA8KD6RF30 607 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 ABLIM1O14639 778 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 OPA1O60313 960 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 TOM1L1O75674 476 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 CYP1A1P04798 512 aaPredicted RBP21.7■■□□□ 1.07
CLN3-230ENST00000568076 CLTAP09496 248 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 GOLGA6DP0CG33 693 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 CTNNA2P26232 953 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 NOP14P78316 857 aaKnown RBP21.7■■□□□ 1.07
CLN3-230ENST00000568076 CFAP58Q5T655 872 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 MROH8Q9H579 483 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 GOLGA6AQ9NYA3 693 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 PCDHA3Q9Y5H8 950 aa21.7■■□□□ 1.07
CLN3-230ENST00000568076 MCM3APO60318 1980 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 GOLGA6L10A0A0M3HER8 536 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 SPOPO43791 374 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 KRT14P02533 472 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 PRKCBP05771 671 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 FLT3P36888 993 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 BPIFB4P59827 614 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 NCOA4Q13772 614 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 CLUL1Q15846 466 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 PRELID2Q8N945 189 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 TCP11Q8WWU5 503 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 ZBTB10Q96DT7 871 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 CYFIP2Q96F07 1278 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 RUFY1Q96T51 708 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 TRIM7Q9C029 511 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 EFCC1Q9HA90 598 aa21.7■■□□□ 1.06
CLN3-230ENST00000568076 MROH7Q68CQ1 1323 aa21.69■■□□□ 1.06
CLN3-230ENST00000568076 CST3P01034 146 aaPredicted RBP21.69■■□□□ 1.06
CLN3-230ENST00000568076 GJB1P08034 283 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms