RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CUTAO60888 179 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 CLCNKBP51801 687 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 SLC10A6Q3KNW5 377 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 FOXD4L5Q5VV16 416 aaPredicted RBP20.42■□□□□ 0.86
CLN3-227ENST00000567495 SLFN12LQ6IEE8 588 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 C15orf39Q6ZRI6 1047 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 DYMQ7RTS9 669 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 ZNF720Q7Z2F6 126 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 RNF135Q8IUD6 432 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 HASPINQ8TF76 798 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 FOXD4L4Q8WXT5 416 aaPredicted RBP20.42■□□□□ 0.86
CLN3-227ENST00000567495 RPGRIP1Q96KN7 1286 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 RHOBTB2Q9BYZ6 727 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 CACNG4Q9UBN1 327 aa20.42■□□□□ 0.86
CLN3-227ENST00000567495 A0A0B4J269 797 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 MYMKA6NI61 221 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 OGTO15294 1046 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 FGFR3P22607 806 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 ALCAMQ13740 583 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 HERC4Q5GLZ8 1057 aaPredicted RBP20.41■□□□□ 0.86
CLN3-227ENST00000567495 TMEM31Q5JXX7 168 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 RTP2Q5QGT7 225 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 GPR149Q86SP6 731 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 CEP57Q86XR8 500 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 C12orf76Q8N812 135 aaPredicted RBP20.41■□□□□ 0.86
CLN3-227ENST00000567495 IQUBQ8NA54 791 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 KHSRPQ92945 711 aaKnown RBP eCLIP20.41■□□□□ 0.86
CLN3-227ENST00000567495 DNAJC19Q96DA6 116 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 B3GALT6Q96L58 329 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 ZMAT2Q96NC0 199 aaKnown RBP20.41■□□□□ 0.86
CLN3-227ENST00000567495 PANK2Q9BZ23 570 aa20.41■□□□□ 0.86
CLN3-227ENST00000567495 MRPL44Q9H9J2 332 aaKnown RBP20.41■□□□□ 0.86
CLN3-227ENST00000567495 GPR37L1O60883 481 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 NMT1P30419 496 aaKnown RBP20.4■□□□□ 0.86
CLN3-227ENST00000567495 AMPD3Q01432 767 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 TMC5Q6UXY8 1006 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 SFR1Q86XK3 245 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 CD302Q8IX05 232 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 MSTO1Q9BUK6 570 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 TNMDQ9H2S6 317 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 MAN1C1Q9NR34 630 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 OLFML3Q9NRN5 406 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 EXOC7Q9UPT5 735 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 PCDHB13Q9Y5F0 798 aa20.4■□□□□ 0.86
CLN3-227ENST00000567495 A0A087X0B3 334 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 TTC26A0AVF1 554 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 PODXLO00592 558 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 XPOTO43592 962 aaKnown RBP20.39■□□□□ 0.85
CLN3-227ENST00000567495 POU5F1Q01860 360 aaKnown RBP20.39■□□□□ 0.85
CLN3-227ENST00000567495 PPP2R3AQ06190 1150 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 SOX4Q06945 474 aaPredicted RBP20.39■□□□□ 0.85
CLN3-227ENST00000567495 POSTNQ15063 836 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 PSMD5Q16401 504 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 LILRA6Q6PI73 481 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 ANKS3Q6ZW76 656 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 PDILTQ8N807 584 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 SPRYD3Q8NCJ5 442 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 LNX1Q8TBB1 728 aaPredicted RBP20.39■□□□□ 0.85
CLN3-227ENST00000567495 HAPLN2Q9GZV7 340 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 POMKQ9H5K3 350 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 RPF1Q9H9Y2 349 aaKnown RBP20.39■□□□□ 0.85
CLN3-227ENST00000567495 USTQ9Y2C2 406 aa20.39■□□□□ 0.85
CLN3-227ENST00000567495 TDRD15B5MCY1 1934 aaKnown RBP20.39■□□□□ 0.85
CLN3-227ENST00000567495 FRMD3A2A2Y4 597 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 TGM5O43548 720 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 PPP1R37O75864 691 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 PAPLNO95428 1278 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 ADRB2P07550 413 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 CXCL8P10145 99 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 IDEP14735 1019 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 CYP3A5P20815 502 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 ME1P48163 572 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 SEZ6Q53EL9 994 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 ZC2HC1CQ53FD0 456 aaPredicted RBP20.38■□□□□ 0.85
CLN3-227ENST00000567495 PRSS55Q6UWB4 352 aaPredicted RBP20.38■□□□□ 0.85
CLN3-227ENST00000567495 PALB2Q86YC2 1186 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 CCDC65Q8IXS2 484 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 PYM1Q9BRP8 204 aaKnown RBP20.38■□□□□ 0.85
CLN3-227ENST00000567495 STRA6Q9BX79 667 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 MAGEF1Q9HAY2 307 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 GOLGA2P5Q9HBQ8 144 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 PANK4Q9NVE7 773 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 KBTBD4Q9NVX7 518 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 ZDHHC7Q9NXF8 308 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 FAM13BQ9NYF5 915 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 UBQLN1Q9UMX0 589 aaKnown RBP20.38■□□□□ 0.85
CLN3-227ENST00000567495 NUB1Q9Y5A7 615 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 BACE2Q9Y5Z0 518 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 STYXL1Q9Y6J8 313 aa20.38■□□□□ 0.85
CLN3-227ENST00000567495 SYN3O14994 580 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 MEFVO15553 781 aaPredicted RBP20.37■□□□□ 0.85
CLN3-227ENST00000567495 FAM189A1O60320 539 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 PKP1Q13835 747 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 FOXD4L6Q3SYB3 417 aaPredicted RBP20.37■□□□□ 0.85
CLN3-227ENST00000567495 AXDND1Q5T1B0 1012 aaPredicted RBP20.37■□□□□ 0.85
CLN3-227ENST00000567495 SHC4Q6S5L8 630 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 CD300LGQ6UXG3 332 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 FOXD4L3Q6VB84 417 aaPredicted RBP20.37■□□□□ 0.85
CLN3-227ENST00000567495 STXBP4Q6ZWJ1 553 aa20.37■□□□□ 0.85
CLN3-227ENST00000567495 RTL10Q7L3V2 364 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms