RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 TNFSF13BQ9Y275 285 aa18.53■□□□□ 0.56
CLN3-211ENST00000564091 DCHS1Q96JQ0 3298 aa18.53■□□□□ 0.56
CLN3-211ENST00000564091 ARID2Q68CP9 1835 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 E9PMD0 336 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 NPTX2P47972 431 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 TRAPPC10P48553 1259 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 STARD6P59095 220 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 UVSSAQ2YD98 709 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 PABPC1LQ4VXU2 614 aaKnown RBP18.52■□□□□ 0.56
CLN3-211ENST00000564091 C1orf210Q8IVY1 113 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 FAM184AQ8NB25 1140 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 ING5Q8WYH8 240 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 DDX27Q96GQ7 796 aaKnown RBP18.52■□□□□ 0.56
CLN3-211ENST00000564091 UROC1Q96N76 676 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 ACO2Q99798 780 aaKnown RBP18.52■□□□□ 0.56
CLN3-211ENST00000564091 KXD1Q9BQD3 176 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 PTPRHQ9HD43 1115 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 NOL7Q9UMY1 257 aaKnown RBP18.52■□□□□ 0.56
CLN3-211ENST00000564091 BACE2Q9Y5Z0 518 aa18.52■□□□□ 0.56
CLN3-211ENST00000564091 PP2D1A8MPX8 630 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 CDC25AP30304 524 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 GRM5P41594 1212 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 TOB1P50616 345 aaPredicted RBP18.51■□□□□ 0.55
CLN3-211ENST00000564091 YARSP54577 528 aaKnown RBP18.51■□□□□ 0.55
CLN3-211ENST00000564091 PTGDRQ13258 359 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 PDIA5Q14554 519 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 SLC44A4Q53GD3 710 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 ALKAL1Q6UXT8 129 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 ANKS3Q6ZW76 656 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 MTSS1LQ765P7 747 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 TAS1R3Q7RTX0 852 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 APBB1IPQ7Z5R6 666 aaPredicted RBP18.51■□□□□ 0.55
CLN3-211ENST00000564091 NPAS3Q8IXF0 933 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 DAW1Q8N136 415 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 PJA1Q8NG27 643 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 SHDQ96IW2 340 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 ZMAT2Q96NC0 199 aaKnown RBP18.51■□□□□ 0.55
CLN3-211ENST00000564091 RUSC1Q9BVN2 902 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 CCDC94Q9BW85 323 aaPredicted RBP18.51■□□□□ 0.55
CLN3-211ENST00000564091 TARS2Q9BW92 718 aaKnown RBP18.51■□□□□ 0.55
CLN3-211ENST00000564091 MRPS23Q9Y3D9 190 aaKnown RBP18.51■□□□□ 0.55
CLN3-211ENST00000564091 PCDHB6Q9Y5E3 794 aa18.51■□□□□ 0.55
CLN3-211ENST00000564091 TRAPPC3O43617 180 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 EIF5BO60841 1220 aaKnown RBP18.5■□□□□ 0.55
CLN3-211ENST00000564091 HIP1RO75146 1068 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 LMNAP02545 664 aaKnown RBP18.5■□□□□ 0.55
CLN3-211ENST00000564091 POU2F2P09086 479 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 SP9P0CG40 484 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 HMGN5P82970 282 aaKnown RBP18.5■□□□□ 0.55
CLN3-211ENST00000564091 IL17AQ16552 155 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 ZNF568Q3ZCX4 644 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 XKR4Q5GH76 650 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 POTEHQ6S545 545 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 IGSF22Q8N9C0 903 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 MCRS1Q96EZ8 462 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 KCNH3Q9ULD8 1083 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 DNM3Q9UQ16 869 aa18.5■□□□□ 0.55
CLN3-211ENST00000564091 MTF2Q9Y483 593 aaPredicted RBP18.5■□□□□ 0.55
CLN3-211ENST00000564091 GPR179Q6PRD1 2367 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 KANSL1LA0AUZ9 987 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 SFI1A8K8P3 1242 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 PODXLO00592 558 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 RHOP08100 348 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 CD72P21854 359 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 ARPP19P56211 112 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 ROR1Q01973 937 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 DMP1Q13316 513 aaPredicted RBP18.49■□□□□ 0.55
CLN3-211ENST00000564091 MLF2Q15773 248 aaPredicted RBP18.49■□□□□ 0.55
CLN3-211ENST00000564091 SLC5A9Q2M3M2 681 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 VARS2Q5ST30 1063 aaKnown RBP18.49■□□□□ 0.55
CLN3-211ENST00000564091 KCNK18Q7Z418 384 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 ZSCAN31Q96LW9 406 aaPredicted RBP18.49■□□□□ 0.55
CLN3-211ENST00000564091 TCHPQ9BT92 498 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 MRPL4Q9BYD3 311 aaKnown RBP18.49■□□□□ 0.55
CLN3-211ENST00000564091 SEMA4AQ9H3S1 761 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 TMEM134Q9H6X4 195 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 KMT5AQ9NQR1 393 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 TOPORSQ9NS56 1045 aaPredicted RBP18.49■□□□□ 0.55
CLN3-211ENST00000564091 ARHGAP28Q9P2N2 729 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 PHLPP2Q6ZVD8 1323 aa18.49■□□□□ 0.55
CLN3-211ENST00000564091 DNAH14Q0VDD8 3507 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 MEFVO15553 781 aaPredicted RBP18.48■□□□□ 0.55
CLN3-211ENST00000564091 HARSP12081 509 aaKnown RBP18.48■□□□□ 0.55
CLN3-211ENST00000564091 U2AF2P26368 475 aaKnown RBP eCLIP18.48■□□□□ 0.55
CLN3-211ENST00000564091 ID4P47928 161 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 MAPK7Q13164 816 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 UBXN2BQ14CS0 331 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 KRT79Q5XKE5 535 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 SLC8B1Q6J4K2 584 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 RINT1Q6NUQ1 792 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 MAML2Q8IZL2 1156 aaPredicted RBP18.48■□□□□ 0.55
CLN3-211ENST00000564091 ZNF461Q8TAF7 563 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 C18orf25Q96B23 403 aaPredicted RBP18.48■□□□□ 0.55
CLN3-211ENST00000564091 ZBTB45Q96K62 511 aaPredicted RBP18.48■□□□□ 0.55
CLN3-211ENST00000564091 ACAP3Q96P50 834 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 DDX23Q9BUQ8 820 aaKnown RBP18.48■□□□□ 0.55
CLN3-211ENST00000564091 RAB34Q9BZG1 259 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 PLA2G2FQ9BZM2 168 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 STK24Q9Y6E0 443 aa18.48■□□□□ 0.55
CLN3-211ENST00000564091 DOCK8Q8NF50 2099 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms