RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TRIM73Q86UV7 250 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 MORC1Q86VD1 984 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 ZNF575Q86XF7 245 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 ZNF610Q8N9Z0 462 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 GPR101Q96P66 508 aaPredicted RBP5.78□□□□□ -1.48
VPS35-205ENST00000563984 SPAG5Q96R06 1193 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 OSBPL6Q9BZF3 934 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 IRAK4Q9NWZ3 460 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 ETAA1Q9NY74 926 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.78□□□□□ -1.48
VPS35-205ENST00000563984 ZMAT5Q9UDW3 170 aaKnown RBP5.78□□□□□ -1.48
VPS35-205ENST00000563984 ATP6V0A2Q9Y487 856 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS35-205ENST00000563984 PIK3R4Q99570 1358 aa5.78□□□□□ -1.48
VPS35-205ENST00000563984 FAM170AA1A519 330 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 CPLX1O14810 134 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 PDE8AO60658 829 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 OPHN1O60890 802 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 TCEA3O75764 348 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 KRT38O76015 456 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 MYCLP1P12525 358 aaPredicted RBP5.77□□□□□ -1.49
VPS35-205ENST00000563984 ACO1P21399 889 aaKnown RBP5.77□□□□□ -1.49
VPS35-205ENST00000563984 MSX2P35548 267 aaPredicted RBP5.77□□□□□ -1.49
VPS35-205ENST00000563984 SNX16P57768 344 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 IL2P60568 153 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 TOMM20Q15388 145 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 PDCD2Q16342 344 aaPredicted RBP5.77□□□□□ -1.49
VPS35-205ENST00000563984 MUM1Q2TAK8 710 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 GAGE13Q4V321 117 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 SPECC1Q5M775 1068 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 AGAP9Q5VTM2 703 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 ARMC3Q5W041 872 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 ESPNLQ6ZVH7 1005 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 CLEC14AQ86T13 490 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 PLA2G15Q8NCC3 412 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 APPL2Q8NEU8 664 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 MYRIPQ8NFW9 859 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 NEK9Q8TD19 979 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 ZBTB10Q96DT7 871 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 HIST1H2AHQ96KK5 128 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 MPHOSPH9Q99550 1183 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 HIST1H2AJQ99878 128 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 UNC45AQ9H3U1 944 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 MTG2Q9H4K7 406 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 SPTLC3Q9NUV7 552 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 MKS1Q9NXB0 559 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 C11orf21Q9P2W6 132 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 INTUQ9ULD6 942 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 RBM8AQ9Y5S9 174 aaKnown RBP5.77□□□□□ -1.49
VPS35-205ENST00000563984 EID1Q9Y6B2 187 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 NINLQ9Y2I6 1382 aa5.77□□□□□ -1.49
VPS35-205ENST00000563984 MYPNQ86TC9 1320 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 A0A1W2PRX2 142 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 MTRF1O75570 445 aaKnown RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 FSBPO95073 299 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 FKBP9O95302 570 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 MYL1P05976 194 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 IL4RP24394 825 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 CCNCP24863 283 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 OAS2P29728 719 aaKnown RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 HOXC13P31276 330 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 GEMIN4P57678 1058 aaKnown RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 BPIFB4P59827 614 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 ZBED6P86452 979 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 HHEXQ03014 270 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 TCIRG1Q13488 830 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 SLC4A8Q2Y0W8 1093 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 ALFQ53S48 1182 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 INO80DQ53TQ3 878 aaPredicted RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 C10orf62Q5T681 223 aaPredicted RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 UNQ6494/PRO21346Q6UXR6 183 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 FKBP9P1Q75LS8 142 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 TRIML1Q8N9V2 468 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 ANKRD53Q8N9V6 530 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 LEO1Q8WVC0 666 aaPredicted RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 RSRC1Q96IZ7 334 aaKnown RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 FAM81BQ96LP2 452 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 ZNF341Q9BYN7 854 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 SLKQ9H2G2 1235 aaPredicted RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 AGO3Q9H9G7 860 aaKnown RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 PPCSQ9HAB8 311 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 QPCTLQ9NXS2 382 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 CPSF2Q9P2I0 782 aaKnown RBP5.76□□□□□ -1.49
VPS35-205ENST00000563984 SEL1LQ9UBV2 794 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 DNAI1Q9UI46 699 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 MSRAQ9UJ68 235 aa5.76□□□□□ -1.49
VPS35-205ENST00000563984 ST20-MTHFSA0A0A6YYL1 179 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 GOLGA8BA8MQT2 603 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 H0Y3Z8 333 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 BOLA2-SMG1P6H3BVE0 249 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 ELL2O00472 640 aaPredicted RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 DYNC1I1O14576 645 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 JUNP05412 331 aaKnown RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 HARSP12081 509 aaKnown RBP5.75□□□□□ -1.49
VPS35-205ENST00000563984 IDEP14735 1019 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 ENPP1P22413 925 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 ALDH1B1P30837 517 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 ADCYAP1R1P41586 468 aa5.75□□□□□ -1.49
VPS35-205ENST00000563984 INHBEP58166 350 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms