RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 HPS5Q9UPZ3 1129 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CDC42BPBQ9Y5S2 1711 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ESYT2A0FGR8 921 aa6.59□□□□□ -1.36
CLK3-212ENST00000563418 TATP17735 454 aaPredicted RBP6.59□□□□□ -1.36
CLK3-212ENST00000563418 ALDH18A1P54886 795 aaKnown RBP6.59□□□□□ -1.36
CLK3-212ENST00000563418 FAM26FQ5R3K3 315 aa6.59□□□□□ -1.36
CLK3-212ENST00000563418 JAMLQ86YT9 394 aa6.59□□□□□ -1.36
CLK3-212ENST00000563418 PI4K2BQ8TCG2 481 aa6.59□□□□□ -1.36
CLK3-212ENST00000563418 CYGBQ8WWM9 190 aa6.59□□□□□ -1.36
CLK3-212ENST00000563418 LARP4BQ92615 738 aaKnown RBP6.59□□□□□ -1.36
CLK3-212ENST00000563418 HPS3Q969F9 1004 aa6.59□□□□□ -1.36
CLK3-212ENST00000563418 KLC2Q9H0B6 622 aa6.59□□□□□ -1.36
CLK3-212ENST00000563418 STK39Q9UEW8 545 aa6.59□□□□□ -1.36
CLK3-212ENST00000563418 MAGEB16A2A368 324 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 H2AFYO75367 372 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 TPPPO94811 219 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CDC25CP30307 473 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 NPEPPSP55786 919 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 ITGADQ13349 1161 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 EFTUD2Q15029 972 aaKnown RBP eCLIP6.58□□□□□ -1.36
CLK3-212ENST00000563418 EXOC3L1Q86VI1 746 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 ZNF786Q8N393 782 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 GTF3C4Q9UKN8 822 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 STX8Q9UNK0 236 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 PLCG2P16885 1265 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 FXR1P51114 621 aaKnown RBP eCLIP6.58□□□□□ -1.36
CLK3-212ENST00000563418 MESDQ14696 234 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 MYBPC3Q14896 1274 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 FAM83BQ5T0W9 1011 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 MTERF3Q96E29 417 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 GCOM2Q9BZD3 368 aaPredicted RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 ADA2Q9NZK5 511 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 PXDNLA1KZ92 1463 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CCDC78A2IDD5 438 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 B4E1Z4 1266 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 PSTPIP1O43586 416 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 PSMA4P25789 261 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 TNNI2P48788 182 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 TYSND1Q2T9J0 566 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 TTC30BQ8N4P2 665 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 MARCH7Q9H992 704 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 ENO2P09104 434 aaPredicted RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 ACAT1P24752 427 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 MAPK4P31152 587 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CLK1P49759 484 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 AOC3Q16853 763 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 BBS9Q3SYG4 887 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 BLIDQ8IZY5 108 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 FBXL13Q8NEE6 735 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 L3MBTL3Q96JM7 780 aaPredicted RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 LRRC42Q9Y546 428 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 ANKRD33BA6NCL7 494 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 C5orf60A6NFR6 353 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 GSTA4O15217 222 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 SLC1A4P43007 532 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 TRADDQ15628 312 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 LONRF1Q17RB8 773 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 ZNF394Q53GI3 561 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 TRIM69Q86WT6 500 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 GALNT6Q8NCL4 622 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 PHC3Q8NDX5 983 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 V9GY48 417 aaPredicted RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 PIK3R2O00459 728 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 NUDT17P0C025 328 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CIITAP33076 1130 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 NCAPHQ15003 741 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 MTDHQ86UE4 582 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 UNC5CLQ8IV45 518 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 VPS54Q9P1Q0 977 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 GNPTGQ9UJJ9 305 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 IQSEC2Q5JU85 1478 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 FLT4P35916 1363 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 USP42Q9H9J4 1324 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 LZTS3O60299 673 aaPredicted RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 CHEK2O96017 543 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 MAPK7Q13164 816 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 DIS3LQ8TF46 1054 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 ANKS1AQ92625 1134 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 PLIN2Q99541 437 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 NSMCE4AQ9NXX6 385 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 DNM3Q9UQ16 869 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 NFIBO00712 420 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CYP21A2P08686 494 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 ATN1P54259 1190 aaPredicted RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 TRIM25Q14258 630 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 ERGIC2Q96RQ1 377 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CCDC90BQ9GZT6 254 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 PCDHB13Q9Y5F0 798 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CDK12Q9NYV4 1490 aaPredicted RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 EDC4Q6P2E9 1401 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 RGS20O76081 388 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 LIFRP42702 1097 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 MMP13P45452 471 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CCNG1P51959 295 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 PURAQ00577 322 aaKnown RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 C6orf10Q5SRN2 563 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 GPBP1Q86WP2 473 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 CLVS1Q8IUQ0 354 aaPredicted RBP6.58□□□□□ -1.36
CLK3-212ENST00000563418 TRIM8Q9BZR9 551 aa6.58□□□□□ -1.36
CLK3-212ENST00000563418 DCLK3Q9C098 648 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms