RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 VTA1Q9NP79 307 aa20.52■□□□□ 0.88
SMPD3-203ENST00000563226 NUB1Q9Y5A7 615 aa20.52■□□□□ 0.88
SMPD3-203ENST00000563226 SNAI1O95863 264 aaPredicted RBP20.52■□□□□ 0.87
SMPD3-203ENST00000563226 ZNF286BP0CG31 522 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 LAMC2Q13753 1193 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 GLE1Q53GS7 698 aaKnown RBP20.52■□□□□ 0.87
SMPD3-203ENST00000563226 CPNE8Q86YQ8 564 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 EXOC8Q8IYI6 725 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 AFG1LQ8WV93 481 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 RUBCNQ92622 972 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 ALG6Q9Y672 507 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 PCNTO95613 3336 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 ZSWIM8A7E2V4 1837 aa20.52■□□□□ 0.87
SMPD3-203ENST00000563226 ESYT3A0FGR9 886 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 INO80B-WBP1J3KQ70 363 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 POLR3GO15318 223 aaPredicted RBP20.51■□□□□ 0.87
SMPD3-203ENST00000563226 RAD51CO43502 376 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 HEXIM1O94992 359 aaKnown RBP20.51■□□□□ 0.87
SMPD3-203ENST00000563226 GH1P01241 217 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 ITGA4P13612 1032 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 INSRRP14616 1297 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 GCLCP48506 637 aaPredicted RBP20.51■□□□□ 0.87
SMPD3-203ENST00000563226 NOP14P78316 857 aaKnown RBP20.51■□□□□ 0.87
SMPD3-203ENST00000563226 MCL1Q07820 350 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 CUL2Q13617 745 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 CLEC16AQ2KHT3 1053 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 GPR142Q7Z601 462 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 ZNF653Q96CK0 615 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 FAM212AQ96EL1 285 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 BTBD6Q96KE9 485 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 INO80BQ9C086 356 aaPredicted RBP20.51■□□□□ 0.87
SMPD3-203ENST00000563226 C2orf40Q9H1Z8 148 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 IVNS1ABPQ9Y6Y0 642 aa20.51■□□□□ 0.87
SMPD3-203ENST00000563226 RBM47A0AV96 593 aaKnown RBP20.5■□□□□ 0.87
SMPD3-203ENST00000563226 OGTO15294 1046 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 CYP1A2P05177 515 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 CLTAP09496 248 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 IQCF3P0C7M6 154 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 PROZP22891 400 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 NCOA4Q13772 614 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 KCTD19Q17RG1 926 aaPredicted RBP20.5■□□□□ 0.87
SMPD3-203ENST00000563226 EEF1DP3Q658K8 133 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 C11orf63Q6NUN7 778 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 CEP120Q8N960 986 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 ALG3Q92685 438 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 PPP1R16BQ96T49 567 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 JPH2Q9BR39 696 aaPredicted RBP20.5■□□□□ 0.87
SMPD3-203ENST00000563226 FZD8Q9H461 694 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 CPSF3Q9UKF6 684 aaKnown RBP20.5■□□□□ 0.87
SMPD3-203ENST00000563226 CELF2O95319 508 aaKnown RBP20.5■□□□□ 0.87
SMPD3-203ENST00000563226 CST3P01034 146 aaPredicted RBP20.5■□□□□ 0.87
SMPD3-203ENST00000563226 MARCKSL1P49006 195 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 TNNC1P63316 161 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 MBTD1Q05BQ5 628 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 MESDQ14696 234 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 SPRYD7Q5W111 196 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 ACAD10Q6JQN1 1059 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 ABRAQ8N0Z2 381 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 MSL3Q8N5Y2 521 aaKnown RBP20.5■□□□□ 0.87
SMPD3-203ENST00000563226 KRT35Q92764 455 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 FAM81BQ96LP2 452 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 NUP85Q9BW27 656 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 MTMR12Q9C0I1 747 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 PTPRHQ9HD43 1115 aa20.5■□□□□ 0.87
SMPD3-203ENST00000563226 ACKR2O00590 384 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 PHACTR2O75167 634 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 CSDE1O75534 798 aaKnown RBP20.49■□□□□ 0.87
SMPD3-203ENST00000563226 MTA2O94776 668 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 CLSTN1O94985 981 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 CFHP08603 1231 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 UNGP13051 313 aaPredicted RBP20.49■□□□□ 0.87
SMPD3-203ENST00000563226 PTENP60484 403 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 GUCY2DQ02846 1103 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 ZNF211Q13398 564 aaPredicted RBP20.49■□□□□ 0.87
SMPD3-203ENST00000563226 TFDP1Q14186 410 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 TRADDQ15628 312 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 ATF7IP2Q5U623 682 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 TSHZ1Q6ZSZ6 1077 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 WDR49Q8IV35 697 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 PPTC7Q8NI37 304 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 ZNF564Q8TBZ8 553 aaPredicted RBP20.49■□□□□ 0.87
SMPD3-203ENST00000563226 EPB41L5Q9HCM4 733 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 GDF3Q9NR23 364 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 GTF3C4Q9UKN8 822 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 HPCAL4Q9UM19 191 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 STRNO43815 780 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 ECM2O94769 699 aaPredicted RBP20.49■□□□□ 0.87
SMPD3-203ENST00000563226 TNFRSF8P28908 595 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 CARSP49589 748 aaKnown RBP20.49■□□□□ 0.87
SMPD3-203ENST00000563226 OSTNP61366 133 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 GRB14Q14449 540 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 AADACL2Q6P093 401 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 TMEM270Q6UE05 265 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 MPZL3Q6UWV2 235 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 ZNF467Q7Z7K2 595 aaPredicted RBP20.49■□□□□ 0.87
SMPD3-203ENST00000563226 THNSL1Q8IYQ7 743 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 DDX47Q9H0S4 455 aaKnown RBP20.49■□□□□ 0.87
SMPD3-203ENST00000563226 RRAGCQ9HB90 399 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 PCDHB4Q9Y5E5 795 aa20.49■□□□□ 0.87
SMPD3-203ENST00000563226 PCDHB2Q9Y5E7 798 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms