RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 C3orf36Q3SXR2 165 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 FAM102AQ5T9C2 384 aaPredicted RBP4.35□□□□□ -1.71
VPS35-203ENST00000562420 THEMIS2Q5TEJ8 643 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 AGAP9Q5VTM2 703 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 METRNLQ641Q3 311 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 SPATA31D4Q6ZUB0 917 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 GDF7Q7Z4P5 450 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 SYT12Q8IV01 421 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 RHOT2Q8IXI1 618 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 ZGPATQ8N5A5 531 aaKnown RBP4.35□□□□□ -1.71
VPS35-203ENST00000562420 AMER2Q8N7J2 671 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 SLC25A43Q8WUT9 341 aaPredicted RBP4.35□□□□□ -1.71
VPS35-203ENST00000562420 DPF2Q92785 391 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 HOOK2Q96ED9 719 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 PLEKHG4BQ96PX9 1271 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 C11orf54Q9H0W9 315 aaPredicted RBP4.35□□□□□ -1.71
VPS35-203ENST00000562420 CDH19Q9H159 772 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 SPON1Q9HCB6 807 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 MAN1C1Q9NR34 630 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 SLC23A1Q9UHI7 598 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 ACTL7AQ9Y615 435 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 PNPLA7Q6ZV29 1317 aa4.35□□□□□ -1.71
VPS35-203ENST00000562420 DRGXA6NNA5 263 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 MARCH11A6NNE9 402 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 HMGB1P1B2RPK0 211 aaPredicted RBP4.34□□□□□ -1.71
VPS35-203ENST00000562420 WNT10BO00744 389 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 POU2F2P09086 479 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 FTH1P19P0C7X4 201 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 U2AF1L5P0DN76 240 aaPredicted RBP4.34□□□□□ -1.71
VPS35-203ENST00000562420 C6P13671 934 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 GCSHP23434 173 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 APOBEC3AP31941 199 aaPredicted RBP4.34□□□□□ -1.71
VPS35-203ENST00000562420 BMPR1AP36894 532 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 IL12RB1P42701 662 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 U2AF1Q01081 240 aaKnown RBP eCLIP4.34□□□□□ -1.71
VPS35-203ENST00000562420 NHLH2Q02577 135 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 TLE1Q04724 770 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 UAP1L1Q3KQV9 507 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 LSM12Q3MHD2 195 aaKnown RBP4.34□□□□□ -1.71
VPS35-203ENST00000562420 ODR4Q5SWX8 454 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 LRRC55Q6ZSA7 311 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 USP45Q70EL2 814 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 RSPH3Q86UC2 560 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 ZNF276Q8N554 614 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 SLC16A11Q8NCK7 471 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 CCHCR1Q8TD31 782 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 ZNF483Q8TF39 744 aaPredicted RBP4.34□□□□□ -1.71
VPS35-203ENST00000562420 PGBD4Q96DM1 585 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 AIFM3Q96NN9 605 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 RHOBTB2Q9BYZ6 727 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 REXO4Q9GZR2 422 aaKnown RBP4.34□□□□□ -1.71
VPS35-203ENST00000562420 AASDHPPTQ9NRN7 309 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 SIDT1Q9NXL6 827 aaKnown RBP4.34□□□□□ -1.71
VPS35-203ENST00000562420 EIF2B4Q9UI10 523 aaKnown RBP4.34□□□□□ -1.71
VPS35-203ENST00000562420 FZD1Q9UP38 647 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 SORCS3Q9UPU3 1222 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 POLHQ9Y253 713 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 PCDHB1Q9Y5F3 818 aa4.34□□□□□ -1.71
VPS35-203ENST00000562420 AHRRA9YTQ3 701 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 LEFTY2O00292 366 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 RNASET2O00584 256 aaKnown RBP4.33□□□□□ -1.72
VPS35-203ENST00000562420 AKAP10O43572 662 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 NARSO43776 548 aaKnown RBP4.33□□□□□ -1.72
VPS35-203ENST00000562420 SCAF4O95104 1147 aaKnown RBP4.33□□□□□ -1.72
VPS35-203ENST00000562420 ZNF202O95125 648 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 ITGB1P05556 798 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 MTHFD1P11586 935 aaKnown RBP4.33□□□□□ -1.72
VPS35-203ENST00000562420 MAKP20794 623 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 PDCP20941 246 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 MCM7P33993 719 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 DEKP35659 375 aaKnown RBP4.33□□□□□ -1.72
VPS35-203ENST00000562420 DSC2Q02487 901 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 CREMQ03060 361 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 UBXN2BQ14CS0 331 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 PABPC1LQ4VXU2 614 aaKnown RBP4.33□□□□□ -1.72
VPS35-203ENST00000562420 USP51Q70EK9 711 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 Q8N1X5 172 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 DCBLD1Q8N8Z6 715 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 RNF169Q8NCN4 708 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 IL17RDQ8NFM7 739 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 FUBP1Q96AE4 644 aaKnown RBP4.33□□□□□ -1.72
VPS35-203ENST00000562420 MYEOVQ96EZ4 313 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 TMX3Q96JJ7 454 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 FAM167AQ96KS9 214 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 NAP1L5Q96NT1 182 aaPredicted RBP4.33□□□□□ -1.72
VPS35-203ENST00000562420 DMRTA2Q96SC8 542 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 PSMD1Q99460 953 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 LDAHQ9H6V9 325 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 POGKQ9P215 609 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 DKK2Q9UBU2 259 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 HS3ST4Q9Y661 456 aa4.33□□□□□ -1.72
VPS35-203ENST00000562420 ARID4BQ4LE39 1312 aaPredicted RBP4.32□□□□□ -1.72
VPS35-203ENST00000562420 TMEM200CA6NKL6 621 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 CYR61O00622 381 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 RRP9O43818 475 aaKnown RBP4.32□□□□□ -1.72
VPS35-203ENST00000562420 HAUS5O94927 633 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 IL33O95760 270 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 ANXA1P04083 346 aa4.32□□□□□ -1.72
VPS35-203ENST00000562420 S100BP04271 92 aaPredicted RBP4.32□□□□□ -1.72
VPS35-203ENST00000562420 HLA-DOAP06340 250 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms