RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CCDC169A6NNP5 214 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 ANHXE9PGG2 379 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 I3L4J1 428 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 K7ERI5 159 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 CCL16O15467 120 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 HIP1RO75146 1068 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 C8AP07357 584 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 FSHRP23945 695 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 NPTX2P47972 431 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 CLCNKBP51801 687 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 EFNA5P52803 228 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 PEX3P56589 373 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 OSTNP61366 133 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 SOX4Q06945 474 aaPredicted RBP12.79□□□□□ -0.36
USP3-220ENST00000561381 HTR4Q13639 388 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 PDIA5Q14554 519 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 C8orf34Q49A92 452 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 RSPO2Q6UXX9 243 aaPredicted RBP12.79□□□□□ -0.36
USP3-220ENST00000561381 ASCL5Q7RTU5 278 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 TAS1R3Q7RTX0 852 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 KCNK18Q7Z418 384 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 C3orf58Q8NDZ4 430 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 MMTAG2Q9BU76 263 aaKnown RBP12.79□□□□□ -0.36
USP3-220ENST00000561381 RPP25Q9BUL9 199 aaKnown RBP12.79□□□□□ -0.36
USP3-220ENST00000561381 CDT1Q9H211 546 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 WNT16Q9UBV4 365 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 TNFSF13BQ9Y275 285 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 NUMBLQ9Y6R0 609 aa12.79□□□□□ -0.36
USP3-220ENST00000561381 PTPRZ1P23471 2315 aaPredicted RBP12.78□□□□□ -0.36
USP3-220ENST00000561381 SMIM28A0A1B0GU29 152 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 SFI1A8K8P3 1242 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 PROB1E7EW31 1015 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 TMEM189-UBE2V1I3L0A0 370 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 SRFP11831 508 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 FGFR3P22607 806 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 TKTP29401 623 aaKnown RBP12.78□□□□□ -0.36
USP3-220ENST00000561381 OR1D2P34982 312 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 NBL1P41271 181 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 BRCC3P46736 316 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 ELAVL2Q12926 359 aaKnown RBP12.78□□□□□ -0.36
USP3-220ENST00000561381 MAPK7Q13164 816 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 UPP1Q16831 310 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 PPM1LQ5SGD2 360 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 LIN9Q5TKA1 542 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 RINT1Q6NUQ1 792 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.78□□□□□ -0.36
USP3-220ENST00000561381 C1orf186Q6ZWK4 172 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 FRMD5Q7Z6J6 570 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 CCDC105Q8IYK2 499 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 SLC7A14Q8TBB6 771 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 GPR152Q8TDT2 470 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 ZMAT2Q96NC0 199 aaKnown RBP12.78□□□□□ -0.36
USP3-220ENST00000561381 ACO2Q99798 780 aaKnown RBP12.78□□□□□ -0.36
USP3-220ENST00000561381 TARS2Q9BW92 718 aaKnown RBP12.78□□□□□ -0.36
USP3-220ENST00000561381 PTPRHQ9HD43 1115 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 HCFC1R1Q9NWW0 138 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 ARHGAP28Q9P2N2 729 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 POLIQ9UNA4 740 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 DNM3Q9UQ16 869 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 ZFHX2Q9C0A1 2572 aaPredicted RBP12.78□□□□□ -0.36
USP3-220ENST00000561381 PHLPP2Q6ZVD8 1323 aa12.78□□□□□ -0.36
USP3-220ENST00000561381 MEFVO15553 781 aaPredicted RBP12.77□□□□□ -0.37
USP3-220ENST00000561381 HNRNPA1P09651 372 aaKnown RBP eCLIP12.77□□□□□ -0.37
USP3-220ENST00000561381 GRM5P41594 1212 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 DMP1Q13316 513 aaPredicted RBP12.77□□□□□ -0.37
USP3-220ENST00000561381 RAB33AQ14088 237 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 ANGPT1Q15389 498 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 ZRSR1Q15695 479 aaKnown RBP12.77□□□□□ -0.37
USP3-220ENST00000561381 ZNF568Q3ZCX4 644 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 AXDND1Q5T1B0 1012 aaPredicted RBP12.77□□□□□ -0.37
USP3-220ENST00000561381 KRT79Q5XKE5 535 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 DCLRE1AQ6PJP8 1040 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 PARM1Q6UWI2 310 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 ALKAL1Q6UXT8 129 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 DTWD2Q8NBA8 298 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 ITFG1Q8TB96 612 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 FGF14Q92915 247 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 NXPE3Q969Y0 559 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 DDX27Q96GQ7 796 aaKnown RBP12.77□□□□□ -0.37
USP3-220ENST00000561381 RTP3Q9BQQ7 232 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 RAB34Q9BZG1 259 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 TMEM134Q9H6X4 195 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 TBC1D17Q9HA65 648 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.77□□□□□ -0.37
USP3-220ENST00000561381 MTRRQ9UBK8 725 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 CDH7Q9ULB5 785 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 CDY1Q9Y6F8 540 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 NOTCH4Q99466 2003 aa12.77□□□□□ -0.37
USP3-220ENST00000561381 MYO15AQ9UKN7 3530 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 PRR23AA6NEV1 266 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 ABLIM1O14639 778 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 SLC16A4O15374 487 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 HARSP12081 509 aaKnown RBP12.76□□□□□ -0.37
USP3-220ENST00000561381 HOXA9P31269 272 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 RAD51AP2Q09MP3 1159 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 XKR4Q5GH76 650 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 MCTP1Q6DN14 999 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 DTHD1Q6ZMT9 781 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 TMEM130Q8N3G9 435 aa12.76□□□□□ -0.37
USP3-220ENST00000561381 FGF13Q92913 245 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms