RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TNNC2P02585 160 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 ALDH2P05091 517 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 ADRB2P07550 413 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 TMEM191BP0C7N4 346 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 CD44P16070 742 aaKnown RBP10.92□□□□□ -0.66
USP3-216ENST00000559873 RPL9P32969 192 aaKnown RBP10.92□□□□□ -0.66
USP3-216ENST00000559873 BMPR1AP36894 532 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 OR1G1P47890 313 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 AP3M2P53677 418 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 ERVK-21P61565 698 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 TAP1Q03518 808 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 KRT17Q04695 432 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 ENPEPQ07075 957 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 CYP24A1Q07973 514 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 DSC1Q08554 894 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 PSMD6Q15008 389 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 KCNT2Q6UVM3 1135 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 CRELD2Q6UXH1 353 aaPredicted RBP10.92□□□□□ -0.66
USP3-216ENST00000559873 ALKAL1Q6UXT8 129 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 WDR49Q8IV35 697 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 FAM114A1Q8IWE2 563 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 COLGALT2Q8IYK4 626 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 COLGALT1Q8NBJ5 622 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 GSTCDQ8NEC7 633 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 FBXO22Q8NEZ5 403 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 DDX27Q96GQ7 796 aaKnown RBP10.92□□□□□ -0.66
USP3-216ENST00000559873 ANKRD36BP1Q96IX9 119 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 PPP1R10Q96QC0 940 aaKnown RBP10.92□□□□□ -0.66
USP3-216ENST00000559873 CGRRF1Q99675 332 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 COLEC11Q9BWP8 271 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 ZNF576Q9H609 170 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 CWH43Q9H720 699 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 NRDE2Q9H7Z3 1164 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 METTL14Q9HCE5 456 aaKnown RBP10.92□□□□□ -0.66
USP3-216ENST00000559873 DMAC2Q9NW81 257 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 MTUS1Q9ULD2 1270 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 FAN1Q9Y2M0 1017 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 CASTOR2A6NHX0 329 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 C5orf67F2Z3F1 127 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 CAVIN2O95810 425 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 NFICP08651 508 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 DLATP10515 647 aaKnown RBP10.91□□□□□ -0.66
USP3-216ENST00000559873 TNNI1P19237 187 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 PAX3P23760 479 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 BCAR1P56945 870 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 STX17P56962 302 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 TFAMQ00059 246 aaKnown RBP10.91□□□□□ -0.66
USP3-216ENST00000559873 UBE3AQ05086 875 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 TYRO3Q06418 890 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 ELAVL2Q12926 359 aaKnown RBP10.91□□□□□ -0.66
USP3-216ENST00000559873 BMS1Q14692 1282 aaKnown RBP10.91□□□□□ -0.66
USP3-216ENST00000559873 CCDC40Q4G0X9 1142 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 EPC2Q52LR7 807 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 ANKRD40Q6AI12 368 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 JADE1Q6IE81 842 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 TTI2Q6NXR4 508 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 LRRC55Q6ZSA7 311 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 ZC3H3Q8IXZ2 948 aaKnown RBP10.91□□□□□ -0.66
USP3-216ENST00000559873 RDH13Q8NBN7 331 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 ARNTL2Q8WYA1 636 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 CCDC127Q96BQ5 260 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 MFSD14AQ96MC6 490 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 ZNF560Q96MR9 790 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 PDE11AQ9HCR9 933 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 SPG21Q9NZD8 308 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 PUF60Q9UHX1 559 aaKnown RBP10.91□□□□□ -0.66
USP3-216ENST00000559873 PLAGL2Q9UPG8 496 aa10.91□□□□□ -0.66
USP3-216ENST00000559873 PRG3Q9Y2Y8 225 aaPredicted RBP10.91□□□□□ -0.66
USP3-216ENST00000559873 TDRD15B5MCY1 1934 aaKnown RBP10.91□□□□□ -0.66
USP3-216ENST00000559873 ARHGEF37A1IGU5 675 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 SYCE3A1L190 88 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 TMEM189-UBE2V1I3L0A0 370 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 PODXLO00592 558 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 TRAPPC3O43617 180 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 AKAP3O75969 853 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 DDHD2O94830 711 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 LRPAP1P30533 357 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 PNPLA4P41247 253 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 SLC11A1P49279 550 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 CASP4P49662 377 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 AFF1P51825 1210 aaKnown RBP10.9□□□□□ -0.66
USP3-216ENST00000559873 PMS1P54277 932 aaKnown RBP10.9□□□□□ -0.66
USP3-216ENST00000559873 BFSP1Q12934 665 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 NAB2Q15742 525 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 PTPROQ16827 1216 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 DUOXA2Q1HG44 320 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 ZSCAN23Q3MJ62 389 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 SPATA1Q5VX52 437 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 DCLRE1AQ6PJP8 1040 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 FILIP1Q7Z7B0 1213 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 ZNF280BQ86YH2 543 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 SLC39A11Q8N1S5 342 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 ZSWIM2Q8NEG5 633 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 TMC2Q8TDI7 906 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 ZMAT2Q96NC0 199 aaKnown RBP10.9□□□□□ -0.66
USP3-216ENST00000559873 C17orf80Q9BSJ5 609 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 LMAN2LQ9H0V9 348 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 MIOSQ9NXC5 875 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 DNAJB4Q9UDY4 337 aa10.9□□□□□ -0.66
USP3-216ENST00000559873 TUBGCP4Q9UGJ1 667 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms