RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 C8AP07357 584 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 FSHRP23945 695 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 NPTX2P47972 431 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 CLCNKBP51801 687 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 EFNA5P52803 228 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 PEX3P56589 373 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 OSTNP61366 133 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 SOX4Q06945 474 aaPredicted RBP12.79□□□□□ -0.36
USP3-214ENST00000559718 HTR4Q13639 388 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 PDIA5Q14554 519 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 C8orf34Q49A92 452 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 RSPO2Q6UXX9 243 aaPredicted RBP12.79□□□□□ -0.36
USP3-214ENST00000559718 ASCL5Q7RTU5 278 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 TAS1R3Q7RTX0 852 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 KCNK18Q7Z418 384 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 C3orf58Q8NDZ4 430 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 HS3ST6Q96QI5 342 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 MMTAG2Q9BU76 263 aaKnown RBP12.79□□□□□ -0.36
USP3-214ENST00000559718 RPP25Q9BUL9 199 aaKnown RBP12.79□□□□□ -0.36
USP3-214ENST00000559718 CDT1Q9H211 546 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 WNT16Q9UBV4 365 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 TNFSF13BQ9Y275 285 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 NUMBLQ9Y6R0 609 aa12.79□□□□□ -0.36
USP3-214ENST00000559718 PTPRZ1P23471 2315 aaPredicted RBP12.78□□□□□ -0.36
USP3-214ENST00000559718 SMIM28A0A1B0GU29 152 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 SFI1A8K8P3 1242 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 PROB1E7EW31 1015 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 TMEM189-UBE2V1I3L0A0 370 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 SRFP11831 508 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 FGFR3P22607 806 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 TKTP29401 623 aaKnown RBP12.78□□□□□ -0.36
USP3-214ENST00000559718 OR1D2P34982 312 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 NBL1P41271 181 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 BRCC3P46736 316 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 ELAVL2Q12926 359 aaKnown RBP12.78□□□□□ -0.36
USP3-214ENST00000559718 MAPK7Q13164 816 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 UPP1Q16831 310 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 PPM1LQ5SGD2 360 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 LIN9Q5TKA1 542 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 RINT1Q6NUQ1 792 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.78□□□□□ -0.36
USP3-214ENST00000559718 C1orf186Q6ZWK4 172 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 FRMD5Q7Z6J6 570 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 CCDC105Q8IYK2 499 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 SLC7A14Q8TBB6 771 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 GPR152Q8TDT2 470 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 ZMAT2Q96NC0 199 aaKnown RBP12.78□□□□□ -0.36
USP3-214ENST00000559718 ACO2Q99798 780 aaKnown RBP12.78□□□□□ -0.36
USP3-214ENST00000559718 TARS2Q9BW92 718 aaKnown RBP12.78□□□□□ -0.36
USP3-214ENST00000559718 PTPRHQ9HD43 1115 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 HCFC1R1Q9NWW0 138 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 ARHGAP28Q9P2N2 729 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 POLIQ9UNA4 740 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 DNM3Q9UQ16 869 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 ZFHX2Q9C0A1 2572 aaPredicted RBP12.78□□□□□ -0.36
USP3-214ENST00000559718 PHLPP2Q6ZVD8 1323 aa12.78□□□□□ -0.36
USP3-214ENST00000559718 MEFVO15553 781 aaPredicted RBP12.77□□□□□ -0.37
USP3-214ENST00000559718 HNRNPA1P09651 372 aaKnown RBP eCLIP12.77□□□□□ -0.37
USP3-214ENST00000559718 GRM5P41594 1212 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 DMP1Q13316 513 aaPredicted RBP12.77□□□□□ -0.37
USP3-214ENST00000559718 RAB33AQ14088 237 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 ANGPT1Q15389 498 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 ZRSR1Q15695 479 aaKnown RBP12.77□□□□□ -0.37
USP3-214ENST00000559718 ZNF568Q3ZCX4 644 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 AXDND1Q5T1B0 1012 aaPredicted RBP12.77□□□□□ -0.37
USP3-214ENST00000559718 KRT79Q5XKE5 535 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 DCLRE1AQ6PJP8 1040 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 PARM1Q6UWI2 310 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 ALKAL1Q6UXT8 129 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 DTWD2Q8NBA8 298 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 ITFG1Q8TB96 612 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 FGF14Q92915 247 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 NXPE3Q969Y0 559 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 DDX27Q96GQ7 796 aaKnown RBP12.77□□□□□ -0.37
USP3-214ENST00000559718 RTP3Q9BQQ7 232 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 RAB34Q9BZG1 259 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 TMEM134Q9H6X4 195 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 TBC1D17Q9HA65 648 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.77□□□□□ -0.37
USP3-214ENST00000559718 MTRRQ9UBK8 725 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 CDH7Q9ULB5 785 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 CDY1Q9Y6F8 540 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 NOTCH4Q99466 2003 aa12.77□□□□□ -0.37
USP3-214ENST00000559718 MYO15AQ9UKN7 3530 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 PRR23AA6NEV1 266 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 ABLIM1O14639 778 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 SLC16A4O15374 487 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 HARSP12081 509 aaKnown RBP12.76□□□□□ -0.37
USP3-214ENST00000559718 HOXB1P14653 301 aaPredicted RBP12.76□□□□□ -0.37
USP3-214ENST00000559718 HOXA9P31269 272 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 RAD51AP2Q09MP3 1159 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 XKR4Q5GH76 650 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 MCTP1Q6DN14 999 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 DTHD1Q6ZMT9 781 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 TMEM130Q8N3G9 435 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 FGF13Q92913 245 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 ZBTB45Q96K62 511 aaPredicted RBP12.76□□□□□ -0.37
USP3-214ENST00000559718 SNX27Q96L92 541 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 PLIN2Q99541 437 aa12.76□□□□□ -0.37
USP3-214ENST00000559718 CCDC94Q9BW85 323 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms