RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CRIPAKQ8N1N5 446 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 LRRC43Q8N309 656 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 FIBCD1Q8N539 461 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 CEP120Q8N960 986 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 BEST2Q8NFU1 509 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 KIF12Q96FN5 646 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 DDX27Q96GQ7 796 aaKnown RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 ANKRD36BP1Q96IX9 119 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 SNX27Q96L92 541 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 UROC1Q96N76 676 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 DUSP9Q99956 384 aaKnown RBP10.01□□□□□ -0.81
LDLR-210ENST00000559340 TMEM175Q9BSA9 504 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 RNF39Q9H2S5 420 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 IKZF4Q9H2S9 585 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 KLK14Q9P0G3 267 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 CNTN3Q9P232 1028 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 INPP5FQ9Y2H2 1132 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 C2CD2Q9Y426 696 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 PCDHA11Q9Y5I1 949 aa10.01□□□□□ -0.81
LDLR-210ENST00000559340 SMIM28A0A1B0GU29 152 aa10□□□□□ -0.81
LDLR-210ENST00000559340 N4BP1O75113 896 aaKnown RBP10□□□□□ -0.81
LDLR-210ENST00000559340 ALDH2P05091 517 aa10□□□□□ -0.81
LDLR-210ENST00000559340 TMEM191BP0C7N4 346 aa10□□□□□ -0.81
LDLR-210ENST00000559340 FGFR1P11362 822 aa10□□□□□ -0.81
LDLR-210ENST00000559340 EEF1GP26641 437 aaKnown RBP10□□□□□ -0.81
LDLR-210ENST00000559340 GTF2H1P32780 548 aa10□□□□□ -0.81
LDLR-210ENST00000559340 RPL9P32969 192 aaKnown RBP10□□□□□ -0.81
LDLR-210ENST00000559340 MLH1P40692 756 aa10□□□□□ -0.81
LDLR-210ENST00000559340 MTIF2P46199 727 aaKnown RBP10□□□□□ -0.81
LDLR-210ENST00000559340 CASP4P49662 377 aa10□□□□□ -0.81
LDLR-210ENST00000559340 CETN1Q12798 172 aa10□□□□□ -0.81
LDLR-210ENST00000559340 TUSC3Q13454 348 aa10□□□□□ -0.81
LDLR-210ENST00000559340 CLLU1OSQ5K130 101 aa10□□□□□ -0.81
LDLR-210ENST00000559340 C11orf57Q6ZUT1 292 aaPredicted RBP10□□□□□ -0.81
LDLR-210ENST00000559340 Q7L0L9 218 aa10□□□□□ -0.81
LDLR-210ENST00000559340 CBWD2Q8IUF1 395 aa10□□□□□ -0.81
LDLR-210ENST00000559340 WDR49Q8IV35 697 aa10□□□□□ -0.81
LDLR-210ENST00000559340 FAM200AQ8TCP9 573 aa10□□□□□ -0.81
LDLR-210ENST00000559340 ZNF689Q96CS4 500 aaPredicted RBP10□□□□□ -0.81
LDLR-210ENST00000559340 SAMD11Q96NU1 681 aa10□□□□□ -0.81
LDLR-210ENST00000559340 CASD1Q96PB1 797 aa10□□□□□ -0.81
LDLR-210ENST00000559340 COLEC11Q9BWP8 271 aa10□□□□□ -0.81
LDLR-210ENST00000559340 NFE2L3Q9Y4A8 694 aa10□□□□□ -0.81
LDLR-210ENST00000559340 PCDHB12Q9Y5F1 795 aa10□□□□□ -0.81
LDLR-210ENST00000559340 SCN1AP35498 2009 aa10□□□□□ -0.81
LDLR-210ENST00000559340 ARHGEF37A1IGU5 675 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 PHACTR2O75167 634 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 AKAP3O75969 853 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 POMCP01189 267 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 DLATP10515 647 aaKnown RBP9.99□□□□□ -0.81
LDLR-210ENST00000559340 LAG3P18627 525 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 ALDH7A1P49419 539 aaKnown RBP9.99□□□□□ -0.81
LDLR-210ENST00000559340 SCNN1GP51170 649 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 MARSP56192 900 aaKnown RBP9.99□□□□□ -0.81
LDLR-210ENST00000559340 MCCD1P59942 119 aaPredicted RBP9.99□□□□□ -0.81
LDLR-210ENST00000559340 SMAD3P84022 425 aaKnown RBP9.99□□□□□ -0.81
LDLR-210ENST00000559340 TFAMQ00059 246 aaKnown RBP9.99□□□□□ -0.81
LDLR-210ENST00000559340 BFSP1Q12934 665 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 ZBTB41Q5SVQ8 909 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 TCERG1LQ5VWI1 586 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 JADE1Q6IE81 842 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 LRRC55Q6ZSA7 311 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 TMEM192Q8IY95 271 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 CCDC150Q8NCX0 1101 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 PARD3BQ8TEW8 1205 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 CCDC127Q96BQ5 260 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 CGRRF1Q99675 332 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 PDE11AQ9HCR9 933 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 RNF19AQ9NV58 838 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 TBC1D13Q9NVG8 400 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 INTS13Q9NVM9 706 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 STK39Q9UEW8 545 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 FAN1Q9Y2M0 1017 aa9.99□□□□□ -0.81
LDLR-210ENST00000559340 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.99□□□□□ -0.81
LDLR-210ENST00000559340 KIAA1671Q9BY89 1806 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 MEIS3P2A8K0S8 358 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 KCNJ18B7U540 433 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 RB1P06400 928 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 PPM1AP35813 382 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 PNPLA4P41247 253 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 CLDN10P78369 228 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 RBP5P82980 135 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 TRPC3Q13507 836 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 KCNJ12Q14500 433 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 BMS1Q14692 1282 aaKnown RBP9.98□□□□□ -0.81
LDLR-210ENST00000559340 ZBTB6Q15916 424 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 MAN2A1Q16706 1144 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 FILIP1LQ4L180 1135 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 PAN2Q504Q3 1202 aaKnown RBP9.98□□□□□ -0.81
LDLR-210ENST00000559340 DCLRE1AQ6PJP8 1040 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 AOPEPQ8N6M6 819 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 ZSWIM2Q8NEG5 633 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 SP7Q8TDD2 431 aaPredicted RBP9.98□□□□□ -0.81
LDLR-210ENST00000559340 BORCS6Q96GS4 357 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 CNOT6LQ96LI5 555 aaKnown RBP9.98□□□□□ -0.81
LDLR-210ENST00000559340 ZFP42Q96MM3 310 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 ZNF558Q96NG5 402 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 PPP1R10Q96QC0 940 aaKnown RBP9.98□□□□□ -0.81
LDLR-210ENST00000559340 CBX8Q9HC52 389 aa9.98□□□□□ -0.81
LDLR-210ENST00000559340 FANCLQ9NW38 375 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms