RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 LANCL2Q9NS86 450 aa6.4□□□□□ -1.38
VPS13C-208ENST00000559119 RBM12Q9NTZ6 932 aaKnown RBP6.4□□□□□ -1.38
VPS13C-208ENST00000559119 FGFR4P22455 802 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 CXADRP78310 365 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 UBXN2BQ14CS0 331 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 MUM1Q2TAK8 710 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 MUM1L1Q5H9M0 696 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 FOXR2Q6PJQ5 311 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 STON2Q8WXE9 905 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 BOD1Q96IK1 185 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 LRFN3Q9BTN0 628 aa6.39□□□□□ -1.39
VPS13C-208ENST00000559119 ACE2Q9BYF1 805 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-208ENST00000559119 GPANK1O95872 356 aa6.38□□□□□ -1.39
VPS13C-208ENST00000559119 ZNF169Q14929 603 aaPredicted RBP6.38□□□□□ -1.39
VPS13C-208ENST00000559119 FAM98AQ8NCA5 519 aaKnown RBP6.38□□□□□ -1.39
VPS13C-208ENST00000559119 TMEM74BQ9NUR3 256 aa6.38□□□□□ -1.39
VPS13C-208ENST00000559119 LRIT1Q9P2V4 623 aa6.38□□□□□ -1.39
VPS13C-208ENST00000559119 SALL3Q9BXA9 1300 aa6.38□□□□□ -1.39
VPS13C-208ENST00000559119 AATKQ6ZMQ8 1374 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 WNT10BO00744 389 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 ENPP3O14638 875 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 GCSHP23434 173 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 ATXN1P54253 815 aaKnown RBP6.37□□□□□ -1.39
VPS13C-208ENST00000559119 HSD11B2P80365 405 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 SIM1P81133 766 aaPredicted RBP6.37□□□□□ -1.39
VPS13C-208ENST00000559119 NOMO1Q15155 1222 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 LRCH2Q5VUJ6 765 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 ZNF529Q6P280 563 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 RNF180Q86T96 592 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 LMBR1Q8WVP7 490 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 FUBP1Q96AE4 644 aaKnown RBP6.37□□□□□ -1.39
VPS13C-208ENST00000559119 ADI1Q9BV57 179 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 LDAHQ9H6V9 325 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 TMEM140Q9NV12 185 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 KCNE5Q9UJ90 142 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 DMTF1Q9Y222 760 aa6.37□□□□□ -1.39
VPS13C-208ENST00000559119 MTO1Q9Y2Z2 717 aaKnown RBP6.37□□□□□ -1.39
VPS13C-208ENST00000559119 ENDOD1O94919 500 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 IGLV2-14P01704 120 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 ALDH1A3P47895 512 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 RARRES1P49788 294 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 GYS2P54840 703 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 SCAND1P57086 179 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 MRPS35P82673 323 aaKnown RBP6.36□□□□□ -1.39
VPS13C-208ENST00000559119 ANO4Q32M45 955 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 SP5Q6BEB4 398 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-208ENST00000559119 OTUD7BQ6GQQ9 843 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 ARHGEF25Q86VW2 580 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 CMIPQ8IY22 773 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 AIFM2Q9BRQ8 373 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 ALG13Q9NP73 1137 aaKnown RBP6.36□□□□□ -1.39
VPS13C-208ENST00000559119 DMRT3Q9NQL9 472 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 FAM30AQ9NZY2 134 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 SCOCQ9UIL1 159 aa6.36□□□□□ -1.39
VPS13C-208ENST00000559119 AJAP1Q9UKB5 411 aaPredicted RBP6.36□□□□□ -1.39
VPS13C-208ENST00000559119 TEX33O43247 280 aa6.35□□□□□ -1.39
VPS13C-208ENST00000559119 ERN1O75460 977 aaKnown RBP6.35□□□□□ -1.39
VPS13C-208ENST00000559119 SLC6A2P23975 617 aa6.35□□□□□ -1.39
VPS13C-208ENST00000559119 GUCY1A2P33402 732 aa6.35□□□□□ -1.39
VPS13C-208ENST00000559119 TOR2AQ5JU69 321 aa6.35□□□□□ -1.39
VPS13C-208ENST00000559119 ZNF362Q5T0B9 420 aaPredicted RBP6.35□□□□□ -1.39
VPS13C-208ENST00000559119 THNSL2Q86YJ6 484 aa6.35□□□□□ -1.39
VPS13C-208ENST00000559119 UBR7Q8N806 425 aa6.35□□□□□ -1.39
VPS13C-208ENST00000559119 PTCD3Q96EY7 689 aaKnown RBP6.35□□□□□ -1.39
VPS13C-208ENST00000559119 USP25Q9UHP3 1055 aa6.35□□□□□ -1.39
VPS13C-208ENST00000559119 SIK3Q9Y2K2 1263 aa6.35□□□□□ -1.39
VPS13C-208ENST00000559119 BRINP1O60477 761 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 CKBP12277 381 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 ALAS1P13196 640 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 PPP3CAQ08209 521 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 CYP2A13Q16696 494 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 UBE3BQ7Z3V4 1068 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 KCNK18Q7Z418 384 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 STRA8Q7Z7C7 330 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 COLGALT2Q8IYK4 626 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 ACTRT2Q8TDY3 377 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 ZNF384Q8TF68 577 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 CASKIN2Q8WXE0 1202 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 HOXB13Q92826 284 aaPredicted RBP6.34□□□□□ -1.39
VPS13C-208ENST00000559119 NACC2Q96BF6 587 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 ORAI2Q96SN7 254 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 FBXO34Q9NWN3 711 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 ACTL7AQ9Y615 435 aa6.34□□□□□ -1.39
VPS13C-208ENST00000559119 PRSS23O95084 383 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 GSPT1P15170 499 aaKnown RBP6.33□□□□□ -1.4
VPS13C-208ENST00000559119 FPR1P21462 350 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 SOX5P35711 763 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 MCAMP43121 646 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 CACNA2D1P54289 1103 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 FAPQ12884 760 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 MALLQ13021 153 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 NAF1Q96HR8 494 aaKnown RBP6.33□□□□□ -1.4
VPS13C-208ENST00000559119 MYOCQ99972 504 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 HEPHQ9BQS7 1158 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 SEMA4GQ9NTN9 838 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 FOXJ2Q9P0K8 574 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 SLC23A1Q9UHI7 598 aa6.33□□□□□ -1.4
VPS13C-208ENST00000559119 CCDC78A2IDD5 438 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 MGST3O14880 152 aa6.32□□□□□ -1.4
VPS13C-208ENST00000559119 VAV2P52735 878 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms