RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 HAPLN2Q9GZV7 340 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 CNOT10Q9H9A5 744 aaKnown RBP13.77□□□□□ -0.21
LDLR-207ENST00000558013 USTQ9Y2C2 406 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 MYPNQ86TC9 1320 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 FSCN2O14926 492 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 WDR46O15213 610 aaKnown RBP13.76□□□□□ -0.21
LDLR-207ENST00000558013 STBD1O95210 358 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 UNGP13051 313 aaPredicted RBP13.76□□□□□ -0.21
LDLR-207ENST00000558013 HSPA6P17066 643 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 DSG3P32926 999 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 ITGA8P53708 1063 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 NLRP11P59045 1033 aaKnown RBP13.76□□□□□ -0.21
LDLR-207ENST00000558013 TAS2R40P59535 323 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 CALCOCO2Q13137 446 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 HP1BP3Q5SSJ5 553 aaPredicted RBP13.76□□□□□ -0.21
LDLR-207ENST00000558013 TAX1BP1Q86VP1 789 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 CCDC50Q8IVM0 306 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 CYP4X1Q8N118 509 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 TMEM143Q96AN5 459 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 HVCN1Q96D96 273 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 C11orf70Q9BRQ4 267 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 MOV10L1Q9BXT6 1211 aaKnown RBP13.76□□□□□ -0.21
LDLR-207ENST00000558013 LRRC19Q9H756 370 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 UVRAGQ9P2Y5 699 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 SEPT9Q9UHD8 586 aaPredicted RBP13.76□□□□□ -0.21
LDLR-207ENST00000558013 PCDHA10Q9Y5I2 948 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 UMODL1Q5DID0 1318 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 NR3C2P08235 984 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 RALAP11233 206 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 CETPP11597 493 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 TNNI1P19237 187 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 C6orf118Q5T5N4 469 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 ANKRD42Q8N9B4 389 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 TMEM174Q8WUU8 243 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 FBXL18Q96ME1 805 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 TEPSINQ96N21 525 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 ADAM33Q9BZ11 813 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 GGA2Q9UJY4 613 aa13.76□□□□□ -0.21
LDLR-207ENST00000558013 CD58P19256 250 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 SSR1P43307 286 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 FSTL1Q12841 308 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 CNGA2Q16280 664 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 SPDYCQ5MJ68 293 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 NLRX1Q86UT6 975 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 FAM83AQ86UY5 434 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 DHX37Q8IY37 1157 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 GDAP1Q8TB36 358 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 IPO4Q8TEX9 1081 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 ZKSCAN4Q969J2 545 aaPredicted RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 RNF146Q9NTX7 359 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 CNOT7Q9UIV1 285 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 EXOC7Q9UPT5 735 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 CTDP1Q9Y5B0 961 aaPredicted RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 PI4K2BG5E9Z4 385 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 VWA5AO00534 786 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 MAPK13O15264 365 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 DPEP1P16444 411 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 EN1Q05925 392 aaPredicted RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 ZNF568Q3ZCX4 644 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 MTERF2Q49AM1 385 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 FAM133BQ5BKY9 247 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 FAM182AQ5T1J6 154 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 TDRD10Q5VZ19 366 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 FUKQ8N0W3 1084 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 GPD1LQ8N335 351 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 GLIS1Q8NBF1 620 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 ACSF2Q96CM8 615 aaPredicted RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 DDX27Q96GQ7 796 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 C9orf72Q96LT7 481 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 APOBEC3GQ9HC16 384 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 MYOZ2Q9NPC6 264 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 ZNF541Q9H0D2 1346 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 GGPS1O95749 300 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 AGTP01019 485 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 KCNA3P22001 575 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 ADCY8P40145 1251 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 VSIG10LQ86VR7 867 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 FAM228AQ86W67 206 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 ARHGEF2Q92974 986 aaKnown RBP13.75□□□□□ -0.21
LDLR-207ENST00000558013 IWS1Q96ST2 819 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 ANKEF1Q9NU02 776 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 ABCF3Q9NUQ8 709 aa13.75□□□□□ -0.21
LDLR-207ENST00000558013 TMEM120BA0PK00 339 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 PMM2O15305 246 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 EDN1P05305 212 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 HARSP12081 509 aaKnown RBP13.74□□□□□ -0.21
LDLR-207ENST00000558013 PSMC4P43686 418 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 JAK3P52333 1124 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 KRT76Q01546 638 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 SLMAPQ14BN4 828 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 RHBDF2Q6PJF5 856 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 SAMD7Q7Z3H4 446 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 CCDC197Q8NCU1 140 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 KIFAP3Q92845 792 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 CENPTQ96BT3 561 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 KIAA1683Q9H0B3 1180 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 FGFR1OP2Q9NVK5 253 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 TTLL13PA6NNM8 815 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 VNN1O95497 513 aa13.74□□□□□ -0.21
LDLR-207ENST00000558013 HLA-DRAP01903 254 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms