RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TRIM51Q9BSJ1 452 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 GRIP2Q9C0E4 1043 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 PHTF1Q9UMS5 762 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 LZTS1Q9Y250 596 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 XDHP47989 1333 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 IGSF1Q8N6C5 1336 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 CACNA1FO60840 1977 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 ERVV-2B6SEH9 535 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 K7EPI3 171 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 CDK2AP1O14519 115 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 MCF2LO15068 1137 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 RARGP13631 454 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 LMNB1P20700 586 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 MMEL1Q495T6 779 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 NET1Q7Z628 596 aaPredicted RBP14.62□□□□□ -0.07
SHMT2-226ENST00000556825 RASGEF1CQ8N431 466 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 TTC30BQ8N4P2 665 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 DCLK2Q8N568 766 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 CHPT1Q8WUD6 406 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 CCSER1Q9C0I3 900 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 ZNF304Q9HCX3 659 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 SUGT1Q9Y2Z0 365 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 MAD1L1Q9Y6D9 718 aa14.62□□□□□ -0.07
SHMT2-226ENST00000556825 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.62□□□□□ -0.07
SHMT2-226ENST00000556825 BTBD18B2RXH4 712 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 H3BSA7 217 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 RIPK2O43353 540 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 FOSL1P15407 271 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 HOXC9P31274 260 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 NUP107P57740 925 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 IL9RQ01113 521 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 SF3B4Q15427 424 aaKnown RBP eCLIP14.61□□□□□ -0.073e-8■■■■■ 35.5
SHMT2-226ENST00000556825 TBC1D10BQ4KMP7 808 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 SFT2D3Q587I9 215 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 DCLRE1AQ6PJP8 1040 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 RAPH1Q70E73 1250 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 CLNKQ7Z7G1 428 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 ZSCAN29Q8IWY8 852 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 CRACR2BQ8N4Y2 399 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 CALML6Q8TD86 181 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 STAMQ92783 540 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 SYMPKQ92797 1274 aaKnown RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 BORCS5Q969J3 196 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 SGF29Q96ES7 293 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 SNF8Q96H20 258 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 NSL1Q96IY1 281 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 SERPINB12Q96P63 405 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 GPAMQ9HCL2 828 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 MAN1C1Q9NR34 630 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 NKIRAS1Q9NYS0 192 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 GDAQ9Y2T3 454 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 WNK3Q9BYP7 1800 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 BAG2O95816 211 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 HSPD1P10809 573 aaKnown RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 BRAFP15056 766 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 PMS1P54277 932 aaKnown RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 DRG2P55039 364 aaKnown RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 POLR2FP61218 127 aaKnown RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 DLG1Q12959 904 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 PDE1CQ14123 709 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 DCAF6Q58WW2 860 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 FAM117BQ6P1L5 589 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 LRRC6Q86X45 466 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 TRIM47Q96LD4 638 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 ZNF287Q9HBT7 754 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 DBF4Q9UBU7 674 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 RSL24D1Q9UHA3 163 aaKnown RBP14.61□□□□□ -0.07
SHMT2-226ENST00000556825 SLC12A7Q9Y666 1083 aa14.61□□□□□ -0.07
SHMT2-226ENST00000556825 DNAJC6O75061 913 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 KRT75O95678 551 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 ZBTB48P10074 688 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 MTIF2P46199 727 aaKnown RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 KPNA1P52294 538 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 PLTPP55058 493 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 KRT81Q14533 505 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 KCTD19Q17RG1 926 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 TMCO4Q5TGY1 634 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 ZDHHC24Q6UX98 284 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 MIER3Q7Z3K6 550 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 CPSF7Q8N684 471 aaKnown RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 LILRB4Q8NHJ6 448 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 ACTRT2Q8TDY3 377 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 ORAI2Q96SN7 254 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 TTC1Q99614 292 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 MRPL1Q9BYD6 325 aaKnown RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 DNAJC16Q9Y2G8 782 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 IFT52Q9Y366 437 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 LTN1O94822 1766 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 LRRC53A6NM62 1247 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 C2CD2LO14523 706 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 RPN1P04843 607 aaKnown RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 COPB2P35606 906 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 CD300CQ08708 224 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 PCSK7Q16549 785 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 KYNUQ16719 465 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 C15orf59Q2T9L4 293 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 MIIPQ5JXC2 388 aa14.6□□□□□ -0.07
SHMT2-226ENST00000556825 UBAP2Q5T6F2 1119 aaKnown RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 MB21D2Q8IYB1 491 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-226ENST00000556825 SIAEQ9HAT2 523 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms