RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 B4GALT5O43286 388 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 DKC1O60832 514 aaKnown RBP eCLIP10.7□□□□□ -0.7
SCFD1-215ENST00000555259 PTPN2P17706 415 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 PSMC3P17980 439 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 CCNE1P24864 410 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 YWHABP31946 246 aaKnown RBP10.7□□□□□ -0.7
SCFD1-215ENST00000555259 MXD4Q14582 209 aaPredicted RBP10.7□□□□□ -0.7
SCFD1-215ENST00000555259 PSAPL1Q6NUJ1 521 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 Q6ZS52 159 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 TCEAL4Q96EI5 215 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 MTRQ99707 1265 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 RBM12Q9NTZ6 932 aaKnown RBP10.7□□□□□ -0.7
SCFD1-215ENST00000555259 C2orf42Q9NWW7 574 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 VPS54Q9P1Q0 977 aa10.7□□□□□ -0.7
SCFD1-215ENST00000555259 A0A1B0GUA9 196 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 ARHGEF37A1IGU5 675 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 SOBPA7XYQ1 873 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 ARNTLO00327 626 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 PTGESO14684 152 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 MICAL2O94851 1124 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 P4HBP07237 508 aaKnown RBP10.69□□□□□ -0.7
SCFD1-215ENST00000555259 FGFR3P22607 806 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 HOXA6P31267 233 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 HOXC13P31276 330 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 POU5F1BQ06416 359 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 SPIRE1Q08AE8 756 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 PPP2R5CQ13362 524 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 CAPSQ13938 189 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 TFDP1Q14186 410 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 LRRC32Q14392 662 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 NAB2Q15742 525 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 RNF20Q5VTR2 975 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 WDR5BQ86VZ2 330 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 C4orf19Q8IY42 314 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 DEPDC1BQ8WUY9 529 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 SMARCD2Q92925 531 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 LOXL4Q96JB6 756 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 CORO1BQ9BR76 489 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 TMEM121BQ9BXQ6 578 aaPredicted RBP10.69□□□□□ -0.7
SCFD1-215ENST00000555259 ANO2Q9NQ90 1003 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 XPNPEP1Q9NQW7 623 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 VAV3Q9UKW4 847 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 AKAP13Q12802 2813 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 WDR27A2RRH5 827 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 ZNF263O14978 683 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 ABCB7O75027 752 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 EPN2O95208 641 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 LRG1P02750 347 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 THP07101 528 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 VIPR2P41587 438 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 CCR2P41597 374 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 RAP1GAPP47736 663 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 MLLT6P55198 1093 aaPredicted RBP10.69□□□□□ -0.7
SCFD1-215ENST00000555259 AKAP17AQ02040 695 aaKnown RBP10.69□□□□□ -0.7
SCFD1-215ENST00000555259 XKR9Q5GH70 373 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 WDR44Q5JSH3 913 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 PLA2G2CQ5R387 149 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 C1orf228Q6PIY5 440 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 MOXD1Q6UVY6 613 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 OTUD6AQ7L8S5 288 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 ASAP3Q8TDY4 903 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 MSANTD3Q96H12 275 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 ZSWIM3Q96MP5 696 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 LXNQ9BS40 222 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 ESYT1Q9BSJ8 1104 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 NFKBIZQ9BYH8 718 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 C22orf23Q9BZE7 217 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 CXCL16Q9H2A7 254 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 DDX25Q9UHL0 483 aaKnown RBP10.69□□□□□ -0.7
SCFD1-215ENST00000555259 WASF3Q9UPY6 502 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 BACE2Q9Y5Z0 518 aa10.69□□□□□ -0.7
SCFD1-215ENST00000555259 SETXQ7Z333 2677 aaKnown RBP10.68□□□□□ -0.7
SCFD1-215ENST00000555259 SPAG17Q6Q759 2223 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 NCANO14594 1321 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 TMEM8BA6NDV4 472 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 SRRM3A6NNA2 597 aaPredicted RBP10.68□□□□□ -0.7
SCFD1-215ENST00000555259 ZNF197O14709 1029 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 ZBTB39O15060 712 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 SLC37A4O43826 429 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 IGFBP6P24592 240 aaPredicted RBP10.68□□□□□ -0.7
SCFD1-215ENST00000555259 NOVA1P51513 510 aaKnown RBP10.68□□□□□ -0.7
SCFD1-215ENST00000555259 NLRP5P59047 1200 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 ROR1Q01973 937 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 FOXC1Q12948 553 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 ADCK5Q3MIX3 580 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 LRSAM1Q6UWE0 723 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 PDZD4Q76G19 769 aaPredicted RBP10.68□□□□□ -0.7
SCFD1-215ENST00000555259 CACNA2D4Q7Z3S7 1137 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 MFSD6LQ8IWD5 586 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 ZNF461Q8TAF7 563 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 DDX27Q96GQ7 796 aaKnown RBP10.68□□□□□ -0.7
SCFD1-215ENST00000555259 RNF26Q9BY78 433 aaPredicted RBP10.68□□□□□ -0.7
SCFD1-215ENST00000555259 ADAM33Q9BZ11 813 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 SLKQ9H2G2 1235 aaPredicted RBP10.68□□□□□ -0.7
SCFD1-215ENST00000555259 SMOC1Q9H4F8 434 aa10.68□□□□□ -0.7
SCFD1-215ENST00000555259 NID2Q14112 1375 aa10.67□□□□□ -0.7
SCFD1-215ENST00000555259 SLC38A8A6NNN8 435 aa10.67□□□□□ -0.7
SCFD1-215ENST00000555259 TMEM189-UBE2V1I3L0A0 370 aa10.67□□□□□ -0.7
SCFD1-215ENST00000555259 PRRG1O14668 218 aa10.67□□□□□ -0.7
SCFD1-215ENST00000555259 GIPC1O14908 333 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms