RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 CEBPZQ03701 1054 aaKnown RBP12.57□□□□□ -0.4
VPS33B-204ENST00000554660 LRMPQ12912 555 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 NPY5RQ15761 445 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 INF2Q27J81 1249 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 RESP18Q5W5W9 173 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 PHLDB3Q6NSJ2 640 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 FUT10Q6P4F1 479 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 MOXD1Q6UVY6 613 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 C1orf210Q8IVY1 113 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 BLIDQ8IZY5 108 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 AOPEPQ8N6M6 819 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 RUBCNQ92622 972 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 NXPE3Q969Y0 559 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 AIFM3Q96NN9 605 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 LXNQ9BS40 222 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 RPP25Q9BUL9 199 aaKnown RBP12.57□□□□□ -0.4
VPS33B-204ENST00000554660 GPR62Q9BZJ7 368 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 NXF3Q9H4D5 531 aaKnown RBP12.57□□□□□ -0.4
VPS33B-204ENST00000554660 SH3GLB2Q9NR46 395 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 MIOSQ9NXC5 875 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 ZDHHC7Q9NXF8 308 aa12.57□□□□□ -0.4
VPS33B-204ENST00000554660 GAS2O43903 313 aaKnown RBP12.56□□□□□ -0.4
VPS33B-204ENST00000554660 SKILP12757 684 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 SYKP43405 635 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 NTHL1P78549 312 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 PPP2R5CQ13362 524 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 TPD52L1Q16890 204 aaPredicted RBP12.56□□□□□ -0.4
VPS33B-204ENST00000554660 CEP135Q66GS9 1140 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 NOTUMQ6P988 496 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 PARM1Q6UWI2 310 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 MAML2Q8IZL2 1156 aaPredicted RBP12.56□□□□□ -0.4
VPS33B-204ENST00000554660 CCAR2Q8N163 923 aaKnown RBP12.56□□□□□ -0.4
VPS33B-204ENST00000554660 TRIML1Q8N9V2 468 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 CNNM3Q8NE01 707 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 HASPINQ8TF76 798 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 FGF14Q92915 247 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 PRKD2Q9BZL6 878 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 FOXP1Q9H334 677 aaPredicted RBP12.56□□□□□ -0.4
VPS33B-204ENST00000554660 PLEKHA4Q9H4M7 779 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 UBN1Q9NPG3 1134 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 SLC2A4RGQ9NR83 387 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 CHST7Q9NS84 486 aa12.56□□□□□ -0.4
VPS33B-204ENST00000554660 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS33B-204ENST00000554660 CGNQ9P2M7 1197 aaKnown RBP12.56□□□□□ -0.4
VPS33B-204ENST00000554660 TDRD15B5MCY1 1934 aaKnown RBP12.56□□□□□ -0.4
VPS33B-204ENST00000554660 FANCMQ8IYD8 2048 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 NCOR2Q9Y618 2525 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 OTOGLQ3ZCN5 2332 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 A0A1B0GVL5 298 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 INO80B-WBP1J3KQ70 363 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 ZBTB39O15060 712 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 PAPLNO95428 1278 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 BMP15O95972 392 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 FSHRP23945 695 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 AKAP5P24588 427 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 YWHABP31946 246 aaKnown RBP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 GPC5P78333 572 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 GUCY1B3Q02153 619 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 CYP4A11Q02928 519 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 SSRP1Q08945 709 aaKnown RBP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 PUM1Q14671 1186 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 NCAPHQ15003 741 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 SAFBQ15424 915 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 RILPL1Q5EBL4 403 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 XKR9Q5GH70 373 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 RTP2Q5QGT7 225 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 LILRA6Q6PI73 481 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 PRSS55Q6UWB4 352 aaPredicted RBP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 GRASPQ7Z6J2 395 aaPredicted RBP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 CDR2LQ86X02 465 aaPredicted RBP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 TRIM22Q8IYM9 498 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 SUMF1Q8NBK3 374 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 DAGLBQ8NCG7 672 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 HDAC7Q8WUI4 952 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 CCDC34Q96HJ3 373 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 MTRQ99707 1265 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 COLEC11Q9BWP8 271 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 TRIM6Q9C030 488 aaPredicted RBP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 CSRNP2Q9H175 543 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 KCNMB3Q9NPA1 279 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 XPNPEP1Q9NQW7 623 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS33B-204ENST00000554660 DLL3Q9NYJ7 618 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 RGL1Q9NZL6 768 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 KLK14Q9P0G3 267 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 DACH1Q9UI36 760 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 ADAM28Q9UKQ2 775 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 PATJQ8NI35 1801 aa12.55□□□□□ -0.4
VPS33B-204ENST00000554660 B4GALT5O43286 388 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 DKC1O60832 514 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS33B-204ENST00000554660 ZMYND10O75800 440 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 DEXIO95424 95 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 P4HBP07237 508 aaKnown RBP12.54□□□□□ -0.4
VPS33B-204ENST00000554660 ARF4P18085 180 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-204ENST00000554660 MYL5Q02045 173 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 MBTD1Q05BQ5 628 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 CAPSQ13938 189 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 CTTNQ14247 550 aaKnown RBP12.54□□□□□ -0.4
VPS33B-204ENST00000554660 AMHR2Q16671 573 aa12.54□□□□□ -0.4
VPS33B-204ENST00000554660 USP41Q3LFD5 358 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms