RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TBC1D22BQ9NU19 505 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 ABCF3Q9NUQ8 709 aa13.09□□□□□ -0.31
SHMT2-207ENST00000553837 PARP14Q460N5 1801 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 VWA5AO00534 786 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 RGS16O15492 202 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-207ENST00000553837 TTI1O43156 1089 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 KRT13P13646 458 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 TNFAIP3P21580 790 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 NCKAP1LP55160 1127 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 BAATQ14032 418 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-207ENST00000553837 C6orf118Q5T5N4 469 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 THEMIS2Q5TEJ8 643 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 PRAMEF18Q5VWM3 479 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 RNF207Q6ZRF8 634 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 CBWD2Q8IUF1 395 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 C4orf19Q8IY42 314 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 XXYLT1Q8NBI6 393 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 BSNDQ8WZ55 320 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 RFFLQ8WZ73 363 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 AGPAT1Q99943 283 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 TMEM117Q9H0C3 514 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 STMN4Q9H169 189 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-207ENST00000553837 ADAM7Q9H2U9 754 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 ARHGEF3Q9NR81 526 aa13.08□□□□□ -0.31
SHMT2-207ENST00000553837 SEPT11Q9NVA2 429 aaKnown RBP13.08□□□□□ -0.31
SHMT2-207ENST00000553837 CHORDC1Q9UHD1 332 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-207ENST00000553837 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.08□□□□□ -0.31
SHMT2-207ENST00000553837 TESPA1A2RU30 521 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-207ENST00000553837 SNX3O60493 162 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 AGTP01019 485 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 ATP4AP20648 1035 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 CDC25CP30307 473 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 MSH2P43246 934 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 BNIP1Q12981 228 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 TAF11Q15544 211 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 CCDC38Q502W7 563 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 XKR9Q5GH70 373 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 FAM102BQ5T8I3 360 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 ZNF746Q6NUN9 644 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-207ENST00000553837 ERICH1Q86X53 443 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 NCAPG2Q86XI2 1143 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 SEMA4DQ92854 862 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 NAF1Q96HR8 494 aaKnown RBP13.08□□□□□ -0.32
SHMT2-207ENST00000553837 FAM84AQ96KN4 292 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 PCDHB18PQ96TA0 734 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 DPH5Q9H2P9 285 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 PABPC3Q9H361 631 aaKnown RBP13.08□□□□□ -0.32
SHMT2-207ENST00000553837 ST6GALNAC4Q9H4F1 302 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 LRRC4CQ9HCJ2 640 aa13.08□□□□□ -0.32
SHMT2-207ENST00000553837 USP15Q9Y4E8 981 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-207ENST00000553837 RLFQ13129 1914 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 ZNF862O60290 1169 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 RGS20O76081 388 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 SUN1O94901 812 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 CHRNB2P17787 502 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 PAPOLAP51003 745 aaKnown RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 PMS2P54278 862 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 PSMC5P62195 406 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 DENND2CQ68D51 928 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 SLC39A4Q6P5W5 647 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 SDCCAG8Q86SQ7 713 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 TMEM161BQ8NDZ6 487 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 KREMEN1Q96MU8 473 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 POP1Q99575 1024 aaKnown RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 TSC22D3Q99576 134 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 OSBPL1AQ9BXW6 950 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 TAOK3Q9H2K8 898 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 PIM2Q9P1W9 311 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 HACL1Q9UJ83 578 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 AMFRQ9UKV5 643 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 PFASO15067 1338 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 TLDC2A0PJX2 215 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 WFS1O76024 890 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 STBD1O95210 358 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 SGPL1O95470 568 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 KRT16P08779 473 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 ABCD1P33897 745 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 COPB2P35606 906 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 NPTX2P47972 431 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 ROR2Q01974 943 aaKnown RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 SF3A3Q12874 501 aaKnown RBP eCLIP13.07□□□□□ -0.326e-8■■□□□ 12.4
SHMT2-207ENST00000553837 ALCAMQ13740 583 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 PPP2R5EQ16537 467 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 ARHGEF16Q5VV41 709 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 CWF19L1Q69YN2 538 aaKnown RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 CHADLQ6NUI6 762 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 AADACL2Q6P093 401 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 MICALL2Q8IY33 904 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 SYCE1Q8N0S2 351 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 REPS2Q8NFH8 660 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 CTNNBL1Q8WYA6 563 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 JDP2Q8WYK2 163 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 ALG3Q92685 438 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 PRCCQ92733 491 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 CELF4Q9BZC1 486 aaKnown RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 TOPORSQ9NS56 1045 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 RNF146Q9NTX7 359 aa13.07□□□□□ -0.32
SHMT2-207ENST00000553837 CNOT7Q9UIV1 285 aaKnown RBP13.07□□□□□ -0.32
SHMT2-207ENST00000553837 COL11A1P12107 1806 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-207ENST00000553837 DOCK5Q9H7D0 1870 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms