RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 GOLGA8IPA6NC78 632 aa18.7■□□□□ 0.58
SYNE3-202ENST00000553340 GOLGA8JA6NMD2 632 aa18.7■□□□□ 0.58
SYNE3-202ENST00000553340 CETPP11597 493 aa18.7■□□□□ 0.58
SYNE3-202ENST00000553340 TAC1P20366 129 aa18.7■□□□□ 0.58
SYNE3-202ENST00000553340 JAG1P78504 1218 aa18.7■□□□□ 0.58
SYNE3-202ENST00000553340 MIER3Q7Z3K6 550 aa18.7■□□□□ 0.58
SYNE3-202ENST00000553340 DHX37Q8IY37 1157 aaKnown RBP18.7■□□□□ 0.58
SYNE3-202ENST00000553340 HELQQ8TDG4 1101 aa18.7■□□□□ 0.58
SYNE3-202ENST00000553340 TXLNGQ9NUQ3 528 aa18.7■□□□□ 0.58
SYNE3-202ENST00000553340 NPM3O75607 178 aaKnown RBP18.69■□□□□ 0.58
SYNE3-202ENST00000553340 ADRB2P07550 413 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 SLC1A1P43005 524 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 GTF2BQ00403 316 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 CENPCQ03188 943 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 ADCY1Q08828 1119 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 SEPT14Q6ZU15 432 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 ZNF365Q70YC5 407 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 DDX1Q92499 740 aaKnown RBP18.69■□□□□ 0.58
SYNE3-202ENST00000553340 NGLY1Q96IV0 654 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 PWWP2AQ96N64 755 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 NT5C1BQ96P26 610 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 IWS1Q96ST2 819 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 LRRC4BQ9NT99 713 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 SLC5A4Q9NY91 659 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 WFS1O76024 890 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 CLEC16AQ2KHT3 1053 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 CCDC89Q8N998 374 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 CNKSR1Q969H4 720 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 FAM81BQ96LP2 452 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 SYNPO2Q9UMS6 1093 aa18.69■□□□□ 0.58
SYNE3-202ENST00000553340 MRPL11Q9Y3B7 192 aaKnown RBP18.69■□□□□ 0.58
SYNE3-202ENST00000553340 GSTTP1A0A1W2PQM5 241 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 FAM47DPA6NHR8 397 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 RASA4BC9J798 803 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 RASA4O43374 803 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 GRIN3BO60391 1043 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 P4HBP07237 508 aaKnown RBP18.68■□□□□ 0.58
SYNE3-202ENST00000553340 TNIP1Q15025 636 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 SETDB1Q15047 1291 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 SNRNP35Q16560 246 aaKnown RBP18.68■□□□□ 0.58
SYNE3-202ENST00000553340 RELL1Q8IUW5 271 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 RIBC1Q8N443 379 aaPredicted RBP18.68■□□□□ 0.58
SYNE3-202ENST00000553340 CCDC127Q96BQ5 260 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 C8orf37Q96NL8 207 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 HERPUD2Q9BSE4 406 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 POLRMTO00411 1230 aaKnown RBP18.68■□□□□ 0.58
SYNE3-202ENST00000553340 ATP5HO75947 161 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 FOXN2P32314 431 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 RARRES1P49788 294 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 GPC3P51654 580 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 CBWD2Q8IUF1 395 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 ANKLE1Q8NAG6 615 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 C9orf72Q96LT7 481 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 ST6GALNAC4Q9H4F1 302 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 TMEM8AQ9HCN3 771 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 R3HDM2Q9Y2K5 976 aaKnown RBP18.68■□□□□ 0.58
SYNE3-202ENST00000553340 COQ4Q9Y3A0 265 aa18.68■□□□□ 0.58
SYNE3-202ENST00000553340 CCNG1P51959 295 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 ANKRD20A2Q5SQ80 823 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 ANKRD20A1Q5TYW2 823 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 ANKRD20A3Q5VUR7 823 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 FAM47EQ6ZV65 393 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 PODNQ7Z5L7 613 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 PAIP2Q9BPZ3 127 aaKnown RBP18.67■□□□□ 0.58
SYNE3-202ENST00000553340 MXRA8Q9BRK3 442 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 ZHX2Q9Y6X8 837 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 RRM1P23921 792 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 TMED2Q15363 201 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 IZUMO3Q5VZ72 239 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 CEP128Q6ZU80 1094 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 VSIG1Q86XK7 387 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 FBXL13Q8NEE6 735 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 DBNDD1Q9H9R9 158 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 ARHGEF10LQ9HCE6 1279 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 AVENQ9NQS1 362 aaPredicted RBP18.67■□□□□ 0.58
SYNE3-202ENST00000553340 EURLQ9NYK6 297 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 PKD2L1Q9P0L9 805 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 STARD13Q9Y3M8 1113 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 NEU2Q9Y3R4 380 aa18.67■□□□□ 0.58
SYNE3-202ENST00000553340 SLC16A4O15374 487 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 KRT5P13647 590 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 ECE1P42892 770 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 MCCD1P59942 119 aaPredicted RBP18.66■□□□□ 0.58
SYNE3-202ENST00000553340 NR1H3Q13133 447 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 PARP6Q2NL67 630 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 GRIPAP1Q4V328 841 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 TMEM63BQ5T3F8 832 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.66■□□□□ 0.58
SYNE3-202ENST00000553340 PARD3BQ8TEW8 1205 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 DHX38Q92620 1227 aaKnown RBP18.66■□□□□ 0.58
SYNE3-202ENST00000553340 DDX27Q96GQ7 796 aaKnown RBP18.66■□□□□ 0.58
SYNE3-202ENST00000553340 RAB20Q9NX57 234 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 ZNFX1Q9P2E3 1918 aaKnown RBP18.66■□□□□ 0.58
SYNE3-202ENST00000553340 MROH7Q68CQ1 1323 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 RALAP11233 206 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 POLGP54098 1239 aaPredicted RBP18.66■□□□□ 0.58
SYNE3-202ENST00000553340 PEX3P56589 373 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 WDR4P57081 412 aaKnown RBP18.66■□□□□ 0.58
SYNE3-202ENST00000553340 CCNG2Q16589 344 aa18.66■□□□□ 0.58
SYNE3-202ENST00000553340 MCOLN2Q8IZK6 566 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms