RNA–Protein interactions for RNA: ENST00000552973.1

NEK3-204, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-204ENST00000552973 SH2B1Q9NRF2 756 aaPredicted RBP12.6□□□□□ -0.39
NEK3-204ENST00000552973 CDH7Q9ULB5 785 aa12.6□□□□□ -0.39
NEK3-204ENST00000552973 ZDBF2Q9HCK1 2354 aa12.6□□□□□ -0.39
NEK3-204ENST00000552973 TRIOO75962 3097 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 SLC16A4O15374 487 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 XYLBO75191 536 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 HNRNPA1P09651 372 aaKnown RBP eCLIP12.59□□□□□ -0.39
NEK3-204ENST00000552973 GRM5P41594 1212 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 YARSP54577 528 aaKnown RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 ARPP19P56211 112 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 DMP1Q13316 513 aaPredicted RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 SEZ6Q53EL9 994 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 MCTP1Q6DN14 999 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 PDXDC1Q6P996 788 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 DTHD1Q6ZMT9 781 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 APBB1IPQ7Z5R6 666 aaPredicted RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 ING5Q8WYH8 240 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 FGF13Q92913 245 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 DDX27Q96GQ7 796 aaKnown RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 ZBTB45Q96K62 511 aaPredicted RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 ZMAT2Q96NC0 199 aaKnown RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 MMTAG2Q9BU76 263 aaKnown RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 MRPL4Q9BYD3 311 aaKnown RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 RAB34Q9BZG1 259 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 FOXQ1Q9C009 403 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 TMEM134Q9H6X4 195 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 PTPRHQ9HD43 1115 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 ARHGEF3Q9NR81 526 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 DNMT3BQ9UBC3 853 aaKnown RBP12.59□□□□□ -0.39
NEK3-204ENST00000552973 MTRRQ9UBK8 725 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 PLXNA3P51805 1871 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 PHLPP2Q6ZVD8 1323 aa12.59□□□□□ -0.39
NEK3-204ENST00000552973 TMEM189-UBE2V1I3L0A0 370 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 LRRN2O75325 713 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 MAPK7Q13164 816 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 SNW1Q13573 536 aaKnown RBP12.58□□□□□ -0.4
NEK3-204ENST00000552973 ALKAL1Q6UXT8 129 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 C1orf186Q6ZWK4 172 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 DENND4AQ7Z401 1863 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 TMEM130Q8N3G9 435 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 C18orf25Q96B23 403 aaPredicted RBP12.58□□□□□ -0.4
NEK3-204ENST00000552973 MCRS1Q96EZ8 462 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 UROC1Q96N76 676 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 ACAP3Q96P50 834 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.58□□□□□ -0.4
NEK3-204ENST00000552973 TOPORSQ9NS56 1045 aaPredicted RBP12.58□□□□□ -0.4
NEK3-204ENST00000552973 SIT1Q9Y3P8 196 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 STK24Q9Y6E0 443 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 PIEZO1Q92508 2521 aa12.58□□□□□ -0.4
NEK3-204ENST00000552973 PODXLO00592 558 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 MEFVO15553 781 aaPredicted RBP12.57□□□□□ -0.4
NEK3-204ENST00000552973 TRAPPC3O43617 180 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 HOXA9P31269 272 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 CACNB1Q02641 598 aaPredicted RBP12.57□□□□□ -0.4
NEK3-204ENST00000552973 UVSSAQ2YD98 709 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 C8orf34Q49A92 452 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 PABPC1LQ4VXU2 614 aaKnown RBP12.57□□□□□ -0.4
NEK3-204ENST00000552973 VARS2Q5ST30 1063 aaKnown RBP12.57□□□□□ -0.4
NEK3-204ENST00000552973 ANKS3Q6ZW76 656 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 ADSSL1Q8N142 457 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 KCNG4Q8TDN1 519 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 SNX27Q96L92 541 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 DRC1Q96MC2 740 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 PNMA5Q96PV4 448 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 KXD1Q9BQD3 176 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 SLC2A4RGQ9NR83 387 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 ARHGAP28Q9P2N2 729 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 MRPS23Q9Y3D9 190 aaKnown RBP12.57□□□□□ -0.4
NEK3-204ENST00000552973 NUB1Q9Y5A7 615 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 BACE2Q9Y5Z0 518 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 ZFP37Q9Y6Q3 630 aaPredicted RBP12.57□□□□□ -0.4
NEK3-204ENST00000552973 R4GN57 208 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 C2orf16Q68DN1 1984 aa12.57□□□□□ -0.4
NEK3-204ENST00000552973 NPHP3-ACAD11A0A0J9YXS1 232 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 LAD1O00515 517 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 ABLIM1O14639 778 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 MCF2P10911 925 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 PROZP22891 400 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 ELF1P32519 619 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 PRPHP41219 470 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 ROR1Q01973 937 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 SPAG1Q07617 926 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 XKR4Q5GH76 650 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 PHLDB3Q6NSJ2 640 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 POTEHQ6S545 545 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 MPZL3Q6UWV2 235 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 NPAS3Q8IXF0 933 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 SLC38A7Q9NVC3 462 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 ANKFY1Q9P2R3 1169 aa12.56□□□□□ -0.4
NEK3-204ENST00000552973 RBM19Q9Y4C8 960 aaKnown RBP12.56□□□□□ -0.4
NEK3-204ENST00000552973 TDRD15B5MCY1 1934 aaKnown RBP12.55□□□□□ -0.4
NEK3-204ENST00000552973 WDR27A2RRH5 827 aa12.55□□□□□ -0.4
NEK3-204ENST00000552973 VWA3AA6NCI4 1184 aa12.55□□□□□ -0.4
NEK3-204ENST00000552973 PRRG1O14668 218 aa12.55□□□□□ -0.4
NEK3-204ENST00000552973 LRG1P02750 347 aa12.55□□□□□ -0.4
NEK3-204ENST00000552973 RHOP08100 348 aa12.55□□□□□ -0.4
NEK3-204ENST00000552973 GLULP15104 373 aa12.55□□□□□ -0.4
NEK3-204ENST00000552973 KCNE1P15382 129 aa12.55□□□□□ -0.4
NEK3-204ENST00000552973 CD72P21854 359 aa12.55□□□□□ -0.4
NEK3-204ENST00000552973 MATR3P43243 847 aaKnown RBP eCLIP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms