RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HCFC2Q9Y5Z7 792 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 DNAH12Q6ZR08 3092 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 ZSWIM8A7E2V4 1837 aa4.57□□□□□ -1.68
LIMA1-208ENST00000551691 PIEZO1Q92508 2521 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 CACNA1GO43497 2377 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 KIF24Q5T7B8 1368 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 A0A1W2PQJ5 194 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 MANSC4A6NHS7 340 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 KRIT1O00522 736 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 SCDO00767 359 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 AP1G1O43747 822 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 BUB1BO60566 1050 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 MAFKO60675 156 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 DTNBO60941 627 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 WDHD1O75717 1129 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 ZNF205O95201 554 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 TFRCP02786 760 aaKnown RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 GJB1P08034 283 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 CELA3BP08861 270 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 MSL3P1P0C860 447 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 PAX3P23760 479 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 PPM1FP49593 454 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 INHBEP58166 350 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 ERVFRD-1P60508 538 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 KRT85P78386 507 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 CYP4F8P98187 520 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 CYP4F3Q08477 520 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 TMEM132BQ14DG7 1078 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 GPR19Q15760 415 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 ANO1Q5XXA6 986 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 GALNT18Q6P9A2 607 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 ARHGAP36Q6ZRI8 547 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 CEP68Q76N32 757 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 C11orf96Q7Z7L8 435 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 SLCO6A1Q86UG4 719 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 SP8Q8IXZ3 490 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 TTC5Q8N0Z6 440 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 TP53I13Q8NBR0 393 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 SUPT20HQ8NEM7 779 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 VPS37AQ8NEZ2 397 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 CXorf38Q8TB03 319 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 U2AF1L4Q8WU68 220 aaKnown RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 TRIM63Q969Q1 353 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 ACAP3Q96P50 834 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 JMJD8Q96S16 334 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 TESK2Q96S53 571 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 ELAC2Q9BQ52 826 aaKnown RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 LRFN3Q9BTN0 628 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 EPHX3Q9H6B9 360 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 ACSS2Q9NR19 701 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 CHST12Q9NRB3 414 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 PPARGC1AQ9UBK2 798 aaKnown RBP4.56□□□□□ -1.68
LIMA1-208ENST00000551691 TNFRSF10DQ9UBN6 386 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 POLLQ9UGP5 575 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 CBLCQ9ULV8 474 aa4.56□□□□□ -1.68
LIMA1-208ENST00000551691 REV3LO60673 3130 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 HEG1Q9ULI3 1381 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ABCC4O15439 1325 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 USP34Q70CQ2 3546 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 A0A1B0GTL3 188 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ANO9A1A5B4 782 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 H7BY64 318 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 HRKO00198 91 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 KCNK3O14649 394 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 WNT9AO14904 365 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ECE2O60344 883 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 SGPL1O95470 568 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 CYP17A1P05093 508 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ASGR2P07307 311 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ARL4AP40617 200 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 MRE11P49959 708 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 MECP2P51608 486 aaKnown RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ZNF280AP59817 542 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 PHC1P78364 1004 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ZNF200P98182 395 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 RAPGEF1Q13905 1077 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 MORC3Q14149 939 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 LRRC32Q14392 662 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 GBX1Q14549 363 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 GRM3Q14832 879 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 TERF2Q15554 542 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 INF2Q27J81 1249 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 MTHFSDQ2M296 383 aaKnown RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 GPR158Q5T848 1215 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 HLA-DQA1Q5Y7H0 255 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 FAM109BQ6ICB4 259 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ZNF790Q6PG37 636 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 C1orf228Q6PIY5 440 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 RPTNQ6XPR3 784 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 CCDC149Q6ZUS6 474 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 EPM2AIP1Q7L775 607 aaPredicted RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ARMC9Q7Z3E5 817 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 MORC1Q86VD1 984 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 OSTM1Q86WC4 334 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 PTRH1Q86Y79 214 aaKnown RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 CMTR2Q8IYT2 770 aaKnown RBP4.55□□□□□ -1.68
LIMA1-208ENST00000551691 NLGN4XQ8N0W4 816 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 ZNF610Q8N9Z0 462 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 TMEM52Q8NDY8 209 aa4.55□□□□□ -1.68
LIMA1-208ENST00000551691 IL17REQ8NFR9 667 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms