RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 C11orf70Q9BRQ4 267 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 CNOT8Q9UFF9 292 aaKnown RBP11.89□□□□□ -0.51
CUX1-212ENST00000547394 PDHXO00330 501 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 PRKCBP05771 671 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 ADORA2AP29274 412 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 TNNC1P63316 161 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 PSMD6Q15008 389 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 EFCAB12Q6NXP0 572 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 SYCE1Q8N0S2 351 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 SH2D3CQ8N5H7 860 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 SCFD2Q8WU76 684 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 ARL8AQ96BM9 186 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 C18orf8Q96DM3 657 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 TMEM59LQ9UK28 342 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 INTUQ9ULD6 942 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 DICER1Q9UPY3 1922 aaKnown RBP11.89□□□□□ -0.51
CUX1-212ENST00000547394 EVPLQ92817 2033 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 MAPK13O15264 365 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 MSCO60682 206 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 PYGMP11217 842 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 OSBPP22059 807 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 KCNJ1P48048 391 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 RTP1P59025 263 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 MYL6P60660 151 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 NOP14P78316 857 aaKnown RBP11.89□□□□□ -0.51
CUX1-212ENST00000547394 ITIH3Q06033 890 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 NCOA4Q13772 614 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 C15orf39Q6ZRI6 1047 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 ARMC9Q7Z3E5 817 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 IFT20Q8IY31 132 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 AFG1LQ8WV93 481 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 CPB2Q96IY4 423 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 PBKQ96KB5 322 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 KLHL11Q9NVR0 708 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 PTPN22Q9Y2R2 807 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 CNTNAP2Q9UHC6 1331 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 DNAJC25-GNG10A0A024R161 153 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 BTBD19C9JJ37 291 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 RFX1P22670 979 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 RAP1GAPP47736 663 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 SNRPFP62306 86 aaKnown RBP11.88□□□□□ -0.51
CUX1-212ENST00000547394 GPS2Q13227 327 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 CCDC62Q6P9F0 684 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 ACTRT1Q8TDG2 376 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 CENPHQ9H3R5 247 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 LRRC4CQ9HCJ2 640 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 GDF3Q9NR23 364 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 ANAPC7Q9UJX3 599 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 LAMA2P24043 3122 aaKnown RBP11.88□□□□□ -0.51
CUX1-212ENST00000547394 CCL15-CCL14A0A0B4J2E2 113 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 KRT19P08727 400 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 MCM3P25205 808 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 ANXA13P27216 316 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 SNAPC2Q13487 334 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 CCL15Q16663 113 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 PRAMEF19Q5SWL8 479 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 FAM182AQ5T1J6 154 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 USP50Q70EL3 339 aaPredicted RBP11.88□□□□□ -0.51
CUX1-212ENST00000547394 ATP8B4Q8TF62 1192 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.88□□□□□ -0.51
CUX1-212ENST00000547394 NXF1Q9UBU9 619 aaKnown RBP11.88□□□□□ -0.51
CUX1-212ENST00000547394 USTQ9Y2C2 406 aa11.88□□□□□ -0.51
CUX1-212ENST00000547394 ADGRA2Q96PE1 1338 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 SLC25A27O95847 323 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 CXCL8P10145 99 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 INSRRP14616 1297 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 SSR1P43307 286 aaKnown RBP11.87□□□□□ -0.51
CUX1-212ENST00000547394 EPHB4P54760 987 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 CUL2Q13617 745 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 TMEM174Q8WUU8 243 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 ACSF2Q96CM8 615 aaPredicted RBP11.87□□□□□ -0.51
CUX1-212ENST00000547394 ZIM3Q96PE6 472 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 THAP12O43422 761 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 TUBBP07437 444 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 TGFB3P10600 412 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 ACO1P21399 889 aaKnown RBP11.87□□□□□ -0.51
CUX1-212ENST00000547394 BRD2P25440 801 aaKnown RBP11.87□□□□□ -0.51
CUX1-212ENST00000547394 ECHS1P30084 290 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 SNX1Q13596 522 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 MAPK6Q16659 721 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 CLEC16AQ2KHT3 1053 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 ZNF568Q3ZCX4 644 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 UBAP2Q5T6F2 1119 aaKnown RBP11.87□□□□□ -0.51
CUX1-212ENST00000547394 MMS22LQ6ZRQ5 1243 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 FASTKD5Q7L8L6 764 aaKnown RBP11.87□□□□□ -0.51
CUX1-212ENST00000547394 DPH6Q7L8W6 267 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 USP37Q86T82 979 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 BRI3BPQ8WY22 251 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 ACO2Q99798 780 aaKnown RBP11.87□□□□□ -0.51
CUX1-212ENST00000547394 RNF14Q9UBS8 474 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 POLIQ9UNA4 740 aa11.87□□□□□ -0.51
CUX1-212ENST00000547394 A0A087WZ62 844 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 GLTPD2A6NH11 291 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 GNA15P30679 374 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 RFC5P40937 340 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 CDH8P55286 799 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 RHOT2Q8IXI1 618 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 EFCAB13Q8IY85 973 aa11.86□□□□□ -0.51
CUX1-212ENST00000547394 RBBP8NLQ8NC74 664 aaPredicted RBP11.86□□□□□ -0.51
CUX1-212ENST00000547394 BBXQ8WY36 941 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms