RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CNTNAP3Q9BZ76 1288 aa19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 EPC1Q9H2F5 836 aa19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 ZSCAN32Q9NX65 697 aa19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 ORC3Q9UBD5 711 aaPredicted RBP19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 CDY1Q9Y6F8 540 aa19.67■□□□□ 0.74
CLSTN3-214ENST00000542663 SPTBN2O15020 2390 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 TMEM189-UBE2V1I3L0A0 370 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 NEMFO60524 1076 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 ECI2O75521 394 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 RPS9P46781 194 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 PRPF4BQ13523 1007 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 ZBTB8OSQ8IWT0 167 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 C3orf58Q8NDZ4 430 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 MCPH1Q8NEM0 835 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 MCRS1Q96EZ8 462 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 DDX27Q96GQ7 796 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 PPP1R10Q96QC0 940 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 PRMT8Q9NR22 394 aaPredicted RBP19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 HEBP1Q9NRV9 189 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 SMG5Q9UPR3 1016 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 GDAQ9Y2T3 454 aa19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 MRPS23Q9Y3D9 190 aaKnown RBP19.66■□□□□ 0.74
CLSTN3-214ENST00000542663 KIF26AQ9ULI4 1882 aaPredicted RBP19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 MED24O75448 989 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 PRKCBP05771 671 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 RHOP08100 348 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 ATP2B1P20020 1258 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 TGM1P22735 817 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 TKTP29401 623 aaKnown RBP19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 RBM25P49756 843 aaKnown RBP19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 CLCNKBP51801 687 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 ATXN1P54253 815 aaKnown RBP19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 GLRA4Q5JXX5 417 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 RTL10Q7L3V2 364 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 CATSPER3Q86XQ3 398 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 ZNF687Q8N1G0 1237 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 NELL2Q99435 816 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 TMEM60Q9H2L4 133 aa19.65■□□□□ 0.74
CLSTN3-214ENST00000542663 MYH11P35749 1972 aa19.64■□□□□ 0.74
CLSTN3-214ENST00000542663 F5P12259 2224 aa19.64■□□□□ 0.74
CLSTN3-214ENST00000542663 EPG5Q9HCE0 2579 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 I3L4J1 428 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 ACKR2O00590 384 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 NRG2O14511 850 aaPredicted RBP19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 CEBPBP17676 345 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 FCARP24071 287 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 MAPK6Q16659 721 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 UPP1Q16831 310 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 TANGO2Q6ICL3 276 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 GPR161Q8N6U8 529 aaKnown RBP19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 ADPGKQ9BRR6 497 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 C2orf40Q9H1Z8 148 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 GOLGA2P5Q9HBQ8 144 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 AVENQ9NQS1 362 aaPredicted RBP19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 GDE1Q9NZC3 331 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 BACE2Q9Y5Z0 518 aa19.64■□□□□ 0.73
CLSTN3-214ENST00000542663 BTBD18B2RXH4 712 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 B3GAT3O94766 335 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 TDGF1P13385 188 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 BRCC3P46736 316 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 MTAPQ13126 283 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 TMEM132AQ24JP5 1023 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 ZNF852Q6ZMS4 543 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 WASF1Q92558 559 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 ELSPBP1Q96BH3 223 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 BRMS1Q9HCU9 246 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 TUFT1Q9NNX1 390 aa19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 TPRP12270 2363 aaKnown RBP19.63■□□□□ 0.73
CLSTN3-214ENST00000542663 ANK1P16157 1881 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 ARHGEF37A1IGU5 675 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 NCAM2O15394 837 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 KRT37O76014 449 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 LIG1P18858 919 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 ROR1Q01973 937 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 SOX4Q06945 474 aaPredicted RBP19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 ADCY1Q08828 1119 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 PRSS36Q5K4E3 855 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 NT5DC1Q5TFE4 455 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 ANKS3Q6ZW76 656 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 DNASE1L2Q92874 299 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 KIFC3Q9BVG8 833 aa19.62■□□□□ 0.73
CLSTN3-214ENST00000542663 NUP210Q8TEM1 1887 aaPredicted RBP19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 WDR27A2RRH5 827 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 ABLIM3O94929 683 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 PTPN2P17706 415 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 NAMPTP43490 491 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 DCAF4L1Q3SXM0 396 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 SLC8B1Q6J4K2 584 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 PADI6Q6TGC4 694 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 DIS3L2Q8IYB7 885 aaKnown RBP19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 NECAB1Q8N987 351 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 ZNF461Q8TAF7 563 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 TCEAL4Q96EI5 215 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 UROC1Q96N76 676 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 NACC1Q96RE7 527 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 POLR3CQ9BUI4 534 aaPredicted RBP19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 POLD4Q9HCU8 107 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 PARD6AQ9NPB6 346 aa19.61■□□□□ 0.73
CLSTN3-214ENST00000542663 TBC1D4O60343 1298 aa19.6■□□□□ 0.73
CLSTN3-214ENST00000542663 LARGE1O95461 756 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms