RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ZNF653Q96CK0 615 aa10.57□□□□□ -0.72
SS18-205ENST00000542420 FAM213AQ9BRX8 229 aa10.57□□□□□ -0.72
SS18-205ENST00000542420 NUP85Q9BW27 656 aa10.57□□□□□ -0.72
SS18-205ENST00000542420 DDX47Q9H0S4 455 aaKnown RBP10.57□□□□□ -0.72
SS18-205ENST00000542420 HOMER3Q9NSC5 361 aa10.57□□□□□ -0.72
SS18-205ENST00000542420 SPDYE5A6NIY4 337 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 ASAP2O43150 1006 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 PPFIA2O75334 1257 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 PPFIA4O75335 1185 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 HLA-DRAP01903 254 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 MMEP08473 750 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 STAT5BP51692 787 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 DR1Q01658 176 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 HLTFQ14527 1009 aaKnown RBP eCLIP10.56□□□□□ -0.72
SS18-205ENST00000542420 LIN9Q5TKA1 542 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 WDR49Q8IV35 697 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 ANKRD13AQ8IZ07 590 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 ASAP3Q8TDY4 903 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 ZC3H15Q8WU90 426 aaKnown RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 KAT5Q92993 513 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 ATP6V1G3Q96LB4 118 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 KIFC3Q9BVG8 833 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 MRPL4Q9BYD3 311 aaKnown RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 TXLNGYQ9BZA5 131 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 CCDC113Q9H0I3 377 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 SCAF8Q9UPN6 1271 aaKnown RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 AGTPBP1Q9UPW5 1226 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 CEP83Q9Y592 693 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 SCINQ9Y6U3 715 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 SOWAHBA6NEL2 793 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 FAM153BP0C7A2 387 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 COMTP21964 271 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 NF2P35240 595 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 DNA2P51530 1060 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 GSCP56915 257 aaPredicted RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 CUL2Q13617 745 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 FAM153CQ494X1 144 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 CRELD2Q6UXH1 353 aaPredicted RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 FASTKD5Q7L8L6 764 aaKnown RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 PHF13Q86YI8 300 aaPredicted RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 SULF1Q8IWU6 871 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 MCOLN2Q8IZK6 566 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 UBR7Q8N806 425 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 C3orf20Q8ND61 904 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 ALG3Q92685 438 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 PCYT2Q99447 389 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 AP1M1Q9BXS5 423 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 NFKBIZQ9BYH8 718 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 FAM107BQ9H098 131 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 GOLPH3Q9H4A6 298 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 MROH8Q9H579 483 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 LRRC19Q9H756 370 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 TMBIM4Q9HC24 238 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 MRPL47Q9HD33 250 aaKnown RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 RBAKQ9NYW8 714 aaPredicted RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 BTBD7Q9P203 1132 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 CNOT8Q9UFF9 292 aaKnown RBP10.56□□□□□ -0.72
SS18-205ENST00000542420 FAM153AQ9UHL3 310 aa10.56□□□□□ -0.72
SS18-205ENST00000542420 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.56□□□□□ -0.72
SS18-205ENST00000542420 CNTNAP2Q9UHC6 1331 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 DNAJC25-GNG10A0A024R161 153 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 H0YGN5 161 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 FSCN2O14926 492 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 PSTPIP1O43586 416 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 LSM8O95777 96 aaKnown RBP10.55□□□□□ -0.72
SS18-205ENST00000542420 CLTAP09496 248 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 NUDT17P0C025 328 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 ACO1P21399 889 aaKnown RBP10.55□□□□□ -0.72
SS18-205ENST00000542420 USP8P40818 1118 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 PIK3CAP42336 1068 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 PTGIRP43119 386 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 YWHAEP62258 255 aaKnown RBP10.55□□□□□ -0.72
SS18-205ENST00000542420 C1QBPQ07021 282 aaKnown RBP10.55□□□□□ -0.72
SS18-205ENST00000542420 TTMPQ5BVD1 217 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 TMC3Q7Z5M5 1100 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 SPATS2Q86XZ4 545 aaKnown RBP10.55□□□□□ -0.72
SS18-205ENST00000542420 SLC13A5Q86YT5 568 aaPredicted RBP10.55□□□□□ -0.72
SS18-205ENST00000542420 ZBTB8OSQ8IWT0 167 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 CNPY4Q8N129 248 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 ZNF516Q92618 1163 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 CAPS2Q9BXY5 557 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 ZNF518BQ9C0D4 1074 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 AZI2Q9H6S1 392 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 AMACRQ9UHK6 382 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 NFS1Q9Y697 457 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 RALGAPA2Q2PPJ7 1873 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 ATXN2Q99700 1313 aaKnown RBP10.55□□□□□ -0.72
SS18-205ENST00000542420 PLXNB2O15031 1838 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 TTI1O43156 1089 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 PHACTR2O75167 634 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 TOM1L1O75674 476 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 ITGA4P13612 1032 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 TNNI1P19237 187 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 OSBPP22059 807 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 HSD17B3P37058 310 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 ZNF132P52740 706 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 TAP1Q03518 808 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 TFDP1Q14186 410 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 KYAT1Q16773 422 aa10.55□□□□□ -0.72
SS18-205ENST00000542420 TDRD10Q5VZ19 366 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms