RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	PSMD6	Q15008	389 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	MIIP	Q5JXC2	388 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	SCARA3	Q6AZY7	606 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	AGMO	Q6ZNB7	445 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	SLC24A5	Q71RS6	500 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	ZNF598	Q86UK7	904 aa	Known RBP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	ECHDC2	Q86YB7	292 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	FAM114A1	Q8IWE2	563 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	RNF169	Q8NCN4	708 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	PARD3B	Q8TEW8	1205 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	ZNF516	Q92618	1163 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	NAP1L5	Q96NT1	182 aa	Predicted RBP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	ACAP3	Q96P50	834 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	TUBGCP2	Q9BSJ2	902 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	CCDC94	Q9BW85	323 aa	Predicted RBP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	TRAIP	Q9BWF2	469 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	VPS16	Q9H269	839 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	RPF1	Q9H9Y2	349 aa	Known RBP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	KIAA1586	Q9HCI6	787 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	IL23A	Q9NPF7	189 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	MIOS	Q9NXC5	875 aa		10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	RBAK	Q9NYW8	714 aa	Predicted RBP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	MAGEC2	Q9UBF1	373 aa	Predicted RBP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	ARMCX3	Q9UH62	379 aa	Predicted RBP	10.14	□□□□□ -0.79
DDX55-208	ENST00000541259	GBF1	Q92538	1859 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	TTC26	A0AVF1	554 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	LRRC10B	A6NIK2	292 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	RECQL4	O94761	1208 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	DLAT	P10515	647 aa	Known RBP	10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	KRT13	P13646	458 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	RAB27A	P51159	221 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	VAMP7	P51809	220 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	MCCD1	P59942	119 aa	Predicted RBP	10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	TPM4	P67936	248 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	FPGS	Q05932	587 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	PPP3CA	Q08209	521 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	IKBKE	Q14164	716 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	KYAT1	Q16773	422 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	PTPN21	Q16825	1174 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	UVSSA	Q2YD98	709 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	DCAF17	Q5H9S7	520 aa	Predicted RBP	10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	TCERG1L	Q5VWI1	586 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	ALKAL1	Q6UXT8	129 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	ZNF365	Q70YC5	407 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	INTS8	Q75QN2	995 aa	Known RBP	10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	EFCAB13	Q8IY85	973 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	RPUSD2	Q8IZ73	545 aa	Known RBP	10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	SLC35C1	Q96A29	364 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	ZFP42	Q96MM3	310 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	ZMAT2	Q96NC0	199 aa	Known RBP	10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	MMRN2	Q9H8L6	949 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	GRPEL1	Q9HAV7	217 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	METTL14	Q9HCE5	456 aa	Known RBP	10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	C1orf112	Q9NSG2	853 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	IFNK	Q9P0W0	207 aa		10.13	□□□□□ -0.79
DDX55-208	ENST00000541259	PDE4DIP	Q5VU43	2346 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	TRIM66	O15016	1216 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	TEX33	O43247	280 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	SERPINC1	P01008	464 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	NFIC	P08651	508 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	FGFR1	P11362	822 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	TNNI1	P19237	187 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	GCLM	P48507	274 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	GATM	P50440	423 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	YARS	P54577	528 aa	Known RBP	10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	KCNH2	Q12809	1159 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	PPIG	Q13427	754 aa	Known RBP eCLIP	10.12	□□□□□ -0.79	2e-6	■□□□□ 8.5
DDX55-208	ENST00000541259	MAN2A1	Q16706	1144 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	VWA3B	Q502W6	1294 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	GLRA4	Q5JXX5	417 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	CLLU1OS	Q5K130	101 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	TMEM240	Q5SV17	173 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	JADE1	Q6IE81	842 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	OTOP2	Q7RTS6	562 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	TMCO2	Q7Z6W1	182 aa	Predicted RBP	10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	CRIPAK	Q8N1N5	446 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	GSTCD	Q8NEC7	633 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	OR5B17	Q8NGF7	314 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	SNX27	Q96L92	541 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	FNBP1	Q96RU3	617 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	GAD1	Q99259	594 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	CGRRF1	Q99675	332 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	INTS13	Q9NVM9	706 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	PLAGL2	Q9UPG8	496 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	TNRC18	O15417	2968 aa	Predicted RBP	10.12	□□□□□ -0.79
DDX55-208	ENST00000541259	KIAA1671	Q9BY89	1806 aa		10.12	□□□□□ -0.79
DDX55-208	ENST00000541259		A0A1B0GTH6	734 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	SMIM28	A0A1B0GU29	152 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	ABHD14A-ACY1	A0A1B0GW23	586 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	ARL5C	A6NH57	179 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	PES1	O00541	588 aa	Known RBP	10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	PTGES	O14684	152 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	LRRN2	O75325	713 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	OFD1	O75665	1012 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	UPP2	O95045	317 aa		10.11	□□□□□ -0.79
DDX55-208	ENST00000541259	IL18RAP	O95256	599 aa		10.11	□□□□□ -0.79

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