RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 SNCBQ16143 134 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 SEL1L2Q5TEA6 688 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 SLC39A4Q6P5W5 647 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 CCDC105Q8IYK2 499 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 LRRC34Q8IZ02 419 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 SGSM3Q96HU1 749 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 FAM213AQ9BRX8 229 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 PI4K2AQ9BTU6 479 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 CCDC113Q9H0I3 377 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 KDM4CQ9H3R0 1056 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 XPNPEP1Q9NQW7 623 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 INTS9Q9NV88 658 aaKnown RBP13.39□□□□□ -0.27
RNF4-222ENST00000541204 HOXC10Q9NYD6 342 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 MTRF1LQ9UGC7 380 aaKnown RBP13.39□□□□□ -0.27
RNF4-222ENST00000541204 ADAMTS5Q9UNA0 930 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 TRPC6Q9Y210 931 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 PODXLO00592 558 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 CYP26A1O43174 497 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 USP2O75604 605 aaPredicted RBP13.39□□□□□ -0.27
RNF4-222ENST00000541204 IBSPP21815 317 aaPredicted RBP13.39□□□□□ -0.27
RNF4-222ENST00000541204 RFX1P22670 979 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 CCDC38Q502W7 563 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 EPC2Q52LR7 807 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 FAM228AQ86W67 206 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 SGIP1Q9BQI5 828 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 POLR3FQ9H1D9 316 aaPredicted RBP13.39□□□□□ -0.27
RNF4-222ENST00000541204 R3HDMLQ9H3Y0 253 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 CYP26B1Q9NR63 512 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 EXOC7Q9UPT5 735 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 LTBP3Q9NS15 1303 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 LOC102724159A0A0B4J2E5 919 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 CCT8L1PA6NM43 557 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 RIPK2O43353 540 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 STBD1O95210 358 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 HSPA6P17066 643 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 IFNAR2P48551 515 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 MYBPC2Q14324 1141 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 PWP2Q15269 919 aaKnown RBP13.38□□□□□ -0.27
RNF4-222ENST00000541204 GNPTABQ3T906 1256 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 C6orf118Q5T5N4 469 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 GADL1Q6ZQY3 521 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 SLC47A2Q86VL8 602 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 CCDC25Q86WR0 208 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 MAP4K3Q8IVH8 894 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 SAMD3Q8N6K7 520 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 TAS1R2Q8TE23 839 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 DHX38Q92620 1227 aaKnown RBP13.38□□□□□ -0.27
RNF4-222ENST00000541204 C12orf42Q96LP6 360 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 SCLT1Q96NL6 688 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 IWS1Q96ST2 819 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 SSC5DA1L4H1 1573 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 RTN2O75298 545 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 AGTP01019 485 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 CHRNB2P17787 502 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 OAZ1P54368 228 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 ADCY2Q08462 1091 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 XRCC4Q13426 336 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 SUPT20HL1Q3ZLR7 823 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 MOB2Q70IA6 237 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 NOP9Q86U38 636 aaKnown RBP13.38□□□□□ -0.27
RNF4-222ENST00000541204 NCAPG2Q86XI2 1143 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 ANKS4BQ8N8V4 417 aa13.38□□□□□ -0.27
RNF4-222ENST00000541204 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.38□□□□□ -0.27
RNF4-222ENST00000541204 ELAC2Q9BQ52 826 aaKnown RBP13.38□□□□□ -0.27
RNF4-222ENST00000541204 COL11A1P12107 1806 aaPredicted RBP13.38□□□□□ -0.27
RNF4-222ENST00000541204 VIMP08670 466 aaKnown RBP13.37□□□□□ -0.27
RNF4-222ENST00000541204 COILP38432 576 aaPredicted RBP13.37□□□□□ -0.27
RNF4-222ENST00000541204 POLGP54098 1239 aaPredicted RBP13.37□□□□□ -0.27
RNF4-222ENST00000541204 XRRA1Q6P2D8 792 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 PIGWQ7Z7B1 504 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 CEP57Q86XR8 500 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 C12orf56Q8IXR9 622 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 EPS8L1Q8TE68 723 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 PARD3BQ8TEW8 1205 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 P3H4Q92791 437 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 KIFAP3Q92845 792 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 KREMEN1Q96MU8 473 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 RPS6KC1Q96S38 1066 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 BTBD7Q9P203 1132 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 PARP2Q9UGN5 583 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 TPX2Q9ULW0 747 aaKnown RBP13.37□□□□□ -0.27
RNF4-222ENST00000541204 SNCAIPQ9Y6H5 919 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 SPATA31C2B4DYI2 1134 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 MAFGO15525 162 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 ASAP2O43150 1006 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 SPOPO43791 374 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 RARAP10276 462 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 GHRP10912 638 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 STXBP2Q15833 593 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 MIS18BP1Q6P0N0 1132 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 ABHD15Q6UXT9 468 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 GPC2Q8N158 579 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 CD101Q93033 1021 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 OTUD5Q96G74 571 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 TIPINQ9BVW5 301 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 WNT8AQ9H1J5 351 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 ST6GALNAC4Q9H4F1 302 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 ATP6V0A4Q9HBG4 840 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 DOCK1Q14185 1865 aa13.37□□□□□ -0.27
RNF4-222ENST00000541204 DOCK5Q9H7D0 1870 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms