RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 TYW1Q9NV66 732 aaKnown RBP8□□□□□ -1.13
YBX3-210ENST00000540975 DDX56Q9NY93 547 aaKnown RBP8□□□□□ -1.13
YBX3-210ENST00000540975 RUVBL1Q9Y265 456 aaKnown RBP8□□□□□ -1.13
YBX3-210ENST00000540975 USP15Q9Y4E8 981 aaPredicted RBP8□□□□□ -1.13
YBX3-210ENST00000540975 PCDHB1Q9Y5F3 818 aa8□□□□□ -1.13
YBX3-210ENST00000540975 CTXN1P60606 82 aa7.99□□□□□ -1.13
YBX3-210ENST00000540975 AGAP9Q5VTM2 703 aa7.99□□□□□ -1.13
YBX3-210ENST00000540975 RHOUQ7L0Q8 258 aa7.99□□□□□ -1.13
YBX3-210ENST00000540975 UBE3BQ7Z3V4 1068 aa7.99□□□□□ -1.13
YBX3-210ENST00000540975 RSPH3Q86UC2 560 aa7.99□□□□□ -1.13
YBX3-210ENST00000540975 RAB24Q969Q5 203 aa7.99□□□□□ -1.13
YBX3-210ENST00000540975 CHMP4CQ96CF2 233 aa7.99□□□□□ -1.13
YBX3-210ENST00000540975 AKIP1Q9NQ31 210 aa7.99□□□□□ -1.13
YBX3-210ENST00000540975 GAGE12BA1L429 117 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 GAGE12HA6NDE8 117 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 RNASET2O00584 256 aaKnown RBP7.98□□□□□ -1.13
YBX3-210ENST00000540975 SGTAO43765 313 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 NCR1O76036 304 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 UAP1L1Q3KQV9 507 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 TSHZ3Q63HK5 1081 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 PLXDC1Q8IUK5 500 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 LARP4BQ92615 738 aaKnown RBP7.98□□□□□ -1.13
YBX3-210ENST00000540975 MYEOVQ96EZ4 313 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 DMRTA2Q96SC8 542 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 PCED1AQ9H1Q7 454 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 FBXO34Q9NWN3 711 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 SRRDQ9UH36 339 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 ATP11BQ9Y2G3 1177 aa7.98□□□□□ -1.13
YBX3-210ENST00000540975 TCRBV7S2A1N4TA0A589 114 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 SLPIP03973 132 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 ITGB1P05556 798 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 PDGFRBP09619 1106 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 LAG3P18627 525 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 NEK2P51955 445 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 KLF10Q13118 480 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 DACT2Q5SW24 774 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 PPP4R3AQ6IN85 833 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 ZBTB46Q86UZ6 589 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 RHOT2Q8IXI1 618 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 CMTR2Q8IYT2 770 aaKnown RBP7.97□□□□□ -1.13
YBX3-210ENST00000540975 SYNE4Q8N205 404 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 MIER2Q8N344 545 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 CPA6Q8N4T0 437 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 IFI44Q8TCB0 444 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 TMX3Q96JJ7 454 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 MRGPRX4Q96LA9 322 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 SORCS2Q96PQ0 1159 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 GSTO2Q9H4Y5 243 aa7.97□□□□□ -1.13
YBX3-210ENST00000540975 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.97□□□□□ -1.13
YBX3-210ENST00000540975 ING1Q9UK53 422 aaPredicted RBP7.97□□□□□ -1.13
YBX3-210ENST00000540975 PRSS23O95084 383 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 NDUFA10O95299 355 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 ADH4P08319 380 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 SPATA31D3P0C874 917 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 SLC6A2P23975 617 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 CREMQ03060 361 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 TIGD2Q4W5G0 525 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 SPATA31D4Q6ZUB0 917 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 ULK2Q8IYT8 1036 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 NEU4Q8WWR8 484 aaPredicted RBP7.96□□□□□ -1.14
YBX3-210ENST00000540975 KAT5Q92993 513 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 CLPTM1LQ96KA5 538 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 C11orf54Q9H0W9 315 aaPredicted RBP7.96□□□□□ -1.14
YBX3-210ENST00000540975 DKK2Q9UBU2 259 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 LUC7L2Q9Y383 392 aaKnown RBP7.96□□□□□ -1.14
YBX3-210ENST00000540975 HS3ST4Q9Y661 456 aa7.96□□□□□ -1.14
YBX3-210ENST00000540975 TMEM200CA6NKL6 621 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 PPFIA4O75335 1185 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 ALDH1L1O75891 902 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 DSC2Q02487 901 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 BEAN1Q3B7T3 259 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 TMEM240Q5SV17 173 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 ZNF627Q7L945 461 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 DCBLD1Q8N8Z6 715 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 OR56A1Q8NGH5 318 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 AASDHPPTQ9NRN7 309 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 KLHL11Q9NVR0 708 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 FPGT-TNNI3KV9GXZ4 949 aa7.95□□□□□ -1.14
YBX3-210ENST00000540975 KIAA0391O15091 583 aaKnown RBP7.94□□□□□ -1.14
YBX3-210ENST00000540975 RPLP2P05387 115 aaKnown RBP7.94□□□□□ -1.14
YBX3-210ENST00000540975 ALAS1P13196 640 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 PDCP20941 246 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 BMPR1AP36894 532 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 ZNF280AP59817 542 aaPredicted RBP7.94□□□□□ -1.14
YBX3-210ENST00000540975 FHL2Q14192 279 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 RAB39AQ14964 217 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 ATP2B3Q16720 1220 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 LRRC55Q6ZSA7 311 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 FITM2Q8N6M3 262 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 AMER2Q8N7J2 671 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 NLGN4YQ8NFZ3 816 aaPredicted RBP7.94□□□□□ -1.14
YBX3-210ENST00000540975 PROKR1Q8TCW9 393 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 MLST8Q9BVC4 326 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 REXO4Q9GZR2 422 aaKnown RBP7.94□□□□□ -1.14
YBX3-210ENST00000540975 TCF7L1Q9HCS4 588 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 CALCOCO1Q9P1Z2 691 aa7.94□□□□□ -1.14
YBX3-210ENST00000540975 CFAP20Q9Y6A4 193 aaKnown RBP7.94□□□□□ -1.14
YBX3-210ENST00000540975 CENPVL1A0A0U1RR11 272 aa7.93□□□□□ -1.14
YBX3-210ENST00000540975 ABHD16AO95870 558 aa7.93□□□□□ -1.14
YBX3-210ENST00000540975 CKBP12277 381 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms