RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 EMSYQ7Z589 1322 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 ZBTB5O15062 677 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 EEF2P13639 858 aaKnown RBP13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 RPA1P27694 616 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 MAPK4P31152 587 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 ODR4Q5SWX8 454 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 PPP1R18Q6NYC8 613 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 C4orf50Q6ZRC1 276 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 VCX3BQ9H321 246 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 LRRC19Q9H756 370 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 VCX3AQ9NNX9 186 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 ALG13Q9NP73 1137 aaKnown RBP13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 MTMR4Q9NYA4 1195 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 ANAPC7Q9UJX3 599 aa13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.65□□□□□ -0.22
SFSWAP-209ENST00000540469 BCL9O00512 1426 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 GPR75-ASB3A0A0A6YYF3 556 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 CREB3O43889 395 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 PPP1R11O60927 126 aaPredicted RBP13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 SGPL1O95470 568 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 GAP43P17677 238 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 MAGEA4P43358 317 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 SCNN1BP51168 640 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 ARHGAP4P98171 946 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 TBC1D9BQ66K14 1250 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 MORC4Q8TE76 937 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 ZFAND2BQ8WV99 257 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 CNKSR2Q8WXI2 1034 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 PARVGQ9HBI0 331 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 ASB3Q9Y575 518 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 ANKRD36CQ5JPF3 1778 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 LOC102724428A0A0B4J2F2 783 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 EDF1O60869 148 aaKnown RBP13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 ESRRAP11474 423 aaPredicted RBP13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 RPA3P35244 121 aaPredicted RBP13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 SIK1P57059 783 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 SLC34A1Q06495 639 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 PKN2Q16513 984 aaKnown RBP13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 CYP1B1Q16678 543 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 USH1GQ495M9 461 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 CFAP157Q5JU67 520 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 LVRNQ6Q4G3 990 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 SMIM5Q71RC9 77 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 DRAXINQ8NBI3 349 aaPredicted RBP13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 SLC5A5Q92911 643 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 TRAPPC9Q96Q05 1148 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 CYTH2Q99418 400 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 CYP26A1O43174 497 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 T-ENOLP0DO92 83 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 AKR1B1P15121 316 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 GSTT1P30711 240 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 ZNF543Q08ER8 600 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 KIF22Q14807 665 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 SLC5A9Q2M3M2 681 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 C6orf163Q5TEZ5 329 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 CCDC89Q8N998 374 aa13.64□□□□□ -0.23
SFSWAP-209ENST00000540469 PAPPAQ13219 1627 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 MYO3BQ8WXR4 1341 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 ZWINTO95229 277 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 ASMTLO95671 621 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 PYGBP11216 843 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 RRM1P23921 792 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 BFSP1Q12934 665 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 NR1H3Q13133 447 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 THOC5Q13769 683 aaKnown RBP13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 ATL2Q8NHH9 583 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 CFAP61Q8NHU2 1237 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 TJP3O95049 919 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 TRMT1LQ7Z2T5 733 aaKnown RBP13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 ZNF804AQ7Z570 1209 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 ARHGEF19Q8IW93 802 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 BBOF1Q8ND07 529 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 C7orf43Q8WVR3 580 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 KAT5Q92993 513 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 FAM161BQ96MY7 647 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 GPR88Q9GZN0 384 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 LMCD1Q9NZU5 365 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 LARSQ9P2J5 1176 aaKnown RBP13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 HEY2Q9UBP5 337 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 SMG5Q9UPR3 1016 aaKnown RBP13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 ROBO1Q9Y6N7 1651 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 OPHN1O60890 802 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 PIK3CAP42336 1068 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 PDK4Q16654 411 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 SLC30A10Q6XR72 485 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 OTOAQ7RTW8 1153 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 FAM81AQ8TBF8 368 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 CADM1Q9BY67 442 aaKnown RBP13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 AGPAT3Q9NRZ7 376 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 PDP2Q9P2J9 529 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 LGALS13Q9UHV8 139 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 USP21Q9UK80 565 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 USTQ9Y2C2 406 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 SUGT1Q9Y2Z0 365 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 ACTL7BQ9Y614 415 aa13.63□□□□□ -0.23
SFSWAP-209ENST00000540469 CPA2P48052 419 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 SNAP25P60880 206 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 PTK6Q13882 451 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 P3H1Q32P28 736 aa13.62□□□□□ -0.23
SFSWAP-209ENST00000540469 ACSBG2Q5FVE4 666 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms