RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 LRRC57Q8N9N7 239 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 RNF149Q8NC42 400 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 TPCN2Q8NHX9 752 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 CTNNBL1Q8WYA6 563 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 HINFPQ9BQA5 517 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 GOLPH3Q9H4A6 298 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 PDE11AQ9HCR9 933 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 C1orf112Q9NSG2 853 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 SUCLA2Q9P2R7 463 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 RNF14Q9UBS8 474 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 ZNF236Q9UL36 1845 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 CLDN3O15551 220 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 TOM1L1O75674 476 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 ZRANB2O95218 330 aaKnown RBP eCLIP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 SRGAP2CP0DJJ0 459 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 PAFAH1B1P43034 410 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 IRX1P78414 480 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 ADCY2Q08462 1091 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 TFDP1Q14186 410 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 MAPK6Q16659 721 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 AP1ARQ63HQ0 302 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 DPP9Q86TI2 863 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 PALB2Q86YC2 1186 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 RPUSD2Q8IZ73 545 aaKnown RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 PPTC7Q8NI37 304 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 EPS8L1Q8TE68 723 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 TRAPPC12Q8WVT3 735 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 RFFLQ8WZ73 363 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 EMID1Q96A84 441 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 KATNBL1Q9H079 304 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 ARFGAP3Q9NP61 516 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 NOCTQ9UK39 431 aaKnown RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 ZSWIM8A7E2V4 1837 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 ANKRD62A6NC57 917 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 CYP26A1O43174 497 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 SGPL1O95470 568 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 C4BPAP04003 597 aaKnown RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 LGALS2P05162 132 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 PRKCBP05771 671 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 MAGEA9P43362 315 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 WNT7BP56706 349 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 MRPS25P82663 173 aaKnown RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 C2orf54Q08AI8 447 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 CFAP221Q4G0U5 840 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 ZNF484Q5JVG2 852 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 ZBTB41Q5SVQ8 909 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 GJC2Q5T442 439 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 NOP9Q86U38 636 aaKnown RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 RHPN2Q8IUC4 686 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 SYCE1Q8N0S2 351 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 CGRRF1Q99675 332 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 PTPN18Q99952 460 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 TAS2R14Q9NYV8 317 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 TARSL2A2RTX5 802 aaKnown RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 TTLL13PA6NNM8 815 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 CES2O00748 559 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 ERLIN1O75477 346 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 SNAI1O95863 264 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 HLA-DRAP01903 254 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 ABCB4P21439 1286 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 MAPK4P31152 587 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 ADCYAP1R1P41586 468 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 PIK3CAP42336 1068 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 BIRC3Q13489 604 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 RPS6KA1Q15418 735 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 KCTD19Q17RG1 926 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 WDR44Q5JSH3 913 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 TDRD10Q5VZ19 366 aaKnown RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 LMBRD2Q68DH5 695 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 EFCAB12Q6NXP0 572 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 WDR93Q6P2C0 686 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 PLEKHH3Q7Z736 793 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 SLFN11Q7Z7L1 901 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 SLC47A2Q86VL8 602 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 SDR16C5Q8N3Y7 309 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 MMGT1Q8N4V1 131 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 SPATA4Q8NEY3 305 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 HNRNPLLQ8WVV9 542 aaKnown RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 TAF4BQ92750 862 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 MAML3Q96JK9 1138 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 ACO2Q99798 780 aaKnown RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 PI4K2AQ9BTU6 479 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 ISCUQ9H1K1 167 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 RNPEPQ9H4A4 650 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 PACSIN2Q9UNF0 486 aaPredicted RBP10.36□□□□□ -0.75
CLIP1-212ENST00000540304 PTPRJQ12913 1337 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 CNTNAP2Q9UHC6 1331 aa10.36□□□□□ -0.75
CLIP1-212ENST00000540304 ASAP2O43150 1006 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 ATP8B1O43520 1251 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 C22orf31O95567 290 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 HARSP12081 509 aaKnown RBP10.35□□□□□ -0.75
CLIP1-212ENST00000540304 CYP11B1P15538 503 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 CHRNB2P17787 502 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 MCM3P25205 808 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 CD151P48509 253 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 PDE6CP51160 858 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 CCDC70Q6NSX1 233 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 MMS22LQ6ZRQ5 1243 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 BRSK2Q8IWQ3 736 aa10.35□□□□□ -0.75
CLIP1-212ENST00000540304 METTL13Q8N6R0 699 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms