RNA–Protein interactions for RNA: ENST00000538235.2

CHFR-216, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 687 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-216ENST00000538235 ZNF558Q96NG5 402 aa14.25□□□□□ -0.13
CHFR-216ENST00000538235 TOPORSQ9NS56 1045 aaPredicted RBP14.25□□□□□ -0.13
CHFR-216ENST00000538235 KIAA1468Q9P260 1216 aa14.25□□□□□ -0.13
CHFR-216ENST00000538235 EXOC7Q9UPT5 735 aa14.25□□□□□ -0.13
CHFR-216ENST00000538235 MTCH2Q9Y6C9 303 aa14.25□□□□□ -0.13
CHFR-216ENST00000538235 C2orf16Q68DN1 1984 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 EXTL3O43909 919 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 CLCNKBP51801 687 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 TUSC3Q13454 348 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 COBLL1Q53SF7 1204 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 C1orf220Q5T0J3 134 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 SPOUT1Q5T280 376 aaKnown RBP14.24□□□□□ -0.13
CHFR-216ENST00000538235 ZC3H3Q8IXZ2 948 aaKnown RBP14.24□□□□□ -0.13
CHFR-216ENST00000538235 GPD1LQ8N335 351 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 FEZF2Q8TBJ5 459 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 AUTS2Q8WXX7 1259 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 P2RX5Q93086 422 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 IGSF21Q96ID5 467 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 RPS6KC1Q96S38 1066 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 GPR62Q9BZJ7 368 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 NUP62CLQ9H1M0 184 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 PDE11AQ9HCR9 933 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 UBN1Q9NPG3 1134 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 TRAF3IP3Q9Y228 551 aa14.24□□□□□ -0.13
CHFR-216ENST00000538235 MTCL1Q9Y4B5 1905 aaKnown RBP14.23□□□□□ -0.13
CHFR-216ENST00000538235 I3L4J1 428 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 FSCN2O14926 492 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 NR3C1P04150 777 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 THP07101 528 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 ABCD1P33897 745 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 GTF2F1P35269 517 aaKnown RBP eCLIP14.23□□□□□ -0.13
CHFR-216ENST00000538235 BRCC3P46736 316 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 OR1G1P47890 313 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 RNASELQ05823 741 aaKnown RBP14.23□□□□□ -0.13
CHFR-216ENST00000538235 DPCR1Q3MIW9 517 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 SLFN12LQ6IEE8 588 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 HACE1Q8IYU2 909 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 OR5B17Q8NGF7 314 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 NOC3LQ8WTT2 800 aaKnown RBP14.23□□□□□ -0.13
CHFR-216ENST00000538235 POF1BQ8WVV4 589 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 SAMD11Q96NU1 681 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 DUSP9Q99956 384 aaKnown RBP14.23□□□□□ -0.13
CHFR-216ENST00000538235 TMEM175Q9BSA9 504 aa14.23□□□□□ -0.13
CHFR-216ENST00000538235 RPF1Q9H9Y2 349 aaKnown RBP14.23□□□□□ -0.13
CHFR-216ENST00000538235 RBAKQ9NYW8 714 aaPredicted RBP14.23□□□□□ -0.13
CHFR-216ENST00000538235 PDXKO00764 312 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 SPTLC1O15269 473 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 SMC2O95347 1197 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 YARSP54577 528 aaKnown RBP14.22□□□□□ -0.13
CHFR-216ENST00000538235 DLG4P78352 724 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 RBM10P98175 930 aaKnown RBP14.22□□□□□ -0.13
CHFR-216ENST00000538235 PLCB3Q01970 1234 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 PPP2R3AQ06190 1150 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 CYP24A1Q07973 514 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 UPP1Q16831 310 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 ANKRD40Q6AI12 368 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 CENPPQ6IPU0 288 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 TTI2Q6NXR4 508 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 STXBP4Q6ZWJ1 553 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 RDH13Q8NBN7 331 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 ZNF516Q92618 1163 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 ELMO3Q96BJ8 720 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 FAM212AQ96EL1 285 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 KIF12Q96FN5 646 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 POP1Q99575 1024 aaKnown RBP14.22□□□□□ -0.13
CHFR-216ENST00000538235 PLVAPQ9BX97 442 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 ZBP1Q9H171 429 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 RNF216Q9NWF9 866 aaPredicted RBP14.22□□□□□ -0.13
CHFR-216ENST00000538235 SPG21Q9NZD8 308 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 SIX4Q9UIU6 781 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 CTNND2Q9UQB3 1225 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 XIRP2A4UGR9 3374 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 DOCK6Q96HP0 2047 aa14.22□□□□□ -0.13
CHFR-216ENST00000538235 PTPRDP23468 1912 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 HIDE1A8MVS5 230 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 AKAP3O75969 853 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 RB1P06400 928 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 POU3F3P20264 500 aaPredicted RBP14.21□□□□□ -0.13
CHFR-216ENST00000538235 HSP90AA2PQ14568 343 aaPredicted RBP14.21□□□□□ -0.13
CHFR-216ENST00000538235 SNRNP35Q16560 246 aaKnown RBP14.21□□□□□ -0.13
CHFR-216ENST00000538235 SPATA1Q5VX52 437 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 SLC9A9Q8IVB4 645 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 C1orf127Q8N9H9 656 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 XXYLT1Q8NBI6 393 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 TMEM174Q8WUU8 243 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 BORCS6Q96GS4 357 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 C11orf84Q9BUA3 381 aaPredicted RBP14.21□□□□□ -0.13
CHFR-216ENST00000538235 MTMR12Q9C0I1 747 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 PRDM6Q9NQX0 595 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 RMND1Q9NWS8 449 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 KANSL3Q9P2N6 904 aa14.21□□□□□ -0.13
CHFR-216ENST00000538235 LRRIQ3A6PVS8 624 aaPredicted RBP14.2□□□□□ -0.14
CHFR-216ENST00000538235 PODXLO00592 558 aa14.2□□□□□ -0.14
CHFR-216ENST00000538235 LRRN2O75325 713 aa14.2□□□□□ -0.14
CHFR-216ENST00000538235 NR2F2P24468 414 aa14.2□□□□□ -0.14
CHFR-216ENST00000538235 LRPAP1P30533 357 aa14.2□□□□□ -0.14
CHFR-216ENST00000538235 STX17P56962 302 aa14.2□□□□□ -0.14
CHFR-216ENST00000538235 NFIL3Q16649 462 aa14.2□□□□□ -0.14
CHFR-216ENST00000538235 RTP2Q5QGT7 225 aa14.2□□□□□ -0.14
CHFR-216ENST00000538235 KLHL10Q6JEL2 608 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms