RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 STK24Q9Y6E0 443 aa10.23□□□□□ -0.77
USP28-205ENST00000537706 ARNTLO00327 626 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 DGKEP52429 567 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 TUSC3Q13454 348 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 TXNDC11Q6PKC3 985 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 HASPINQ8TF76 798 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 TCEAL4Q96EI5 215 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 ZFP42Q96MM3 310 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 KIF2CQ99661 725 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 NIFKQ9BYG3 293 aaKnown RBP10.22□□□□□ -0.77
USP28-205ENST00000537706 ASAH2Q9NR71 780 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 MIOSQ9NXC5 875 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 MTRRQ9UBK8 725 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 EBF1Q9UH73 591 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 COL4A3BPQ9Y5P4 624 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 CDY1Q9Y6F8 540 aa10.22□□□□□ -0.77
USP28-205ENST00000537706 IGKV6-21A0A0C4DH24 114 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 PATE3B3GLJ2 98 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 DCLK1O15075 740 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 ADAM12O43184 909 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 CALM1P0DP23 149 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 CALM2P0DP24 149 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 CALM3P0DP25 149 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 MYL4P12829 197 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 SDSP20132 328 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 TARBP2Q15633 366 aaKnown RBP10.21□□□□□ -0.77
USP28-205ENST00000537706 LMBRD2Q68DH5 695 aaPredicted RBP10.21□□□□□ -0.77
USP28-205ENST00000537706 NFXL1Q6ZNB6 911 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 ANKS3Q6ZW76 656 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 ZNF654Q8IZM8 581 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 TTC8Q8TAM2 541 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 CSRNP2Q9H175 543 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 THG1LQ9NWX6 298 aaKnown RBP10.21□□□□□ -0.77
USP28-205ENST00000537706 PARP2Q9UGN5 583 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 TPCN1Q9ULQ1 816 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 BACE2Q9Y5Z0 518 aa10.21□□□□□ -0.77
USP28-205ENST00000537706 A0A087WV48 116 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 MAFO75444 373 aaPredicted RBP10.21□□□□□ -0.78
USP28-205ENST00000537706 ENGP17813 658 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 HOXA11P31270 313 aaPredicted RBP10.21□□□□□ -0.78
USP28-205ENST00000537706 FCHO2Q0JRZ9 810 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 ITPRIPL2Q3MIP1 535 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 FBXO43Q4G163 708 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 ZNF843Q8N446 348 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 NCOA7Q8NI08 942 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 CCDC26Q8TAB7 109 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 PSPC1Q8WXF1 523 aaKnown RBP10.21□□□□□ -0.78
USP28-205ENST00000537706 RABGGTAQ92696 567 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 RNF39Q9H2S5 420 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 IFT122Q9HBG6 1241 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 CYP4F11Q9HBI6 524 aa10.21□□□□□ -0.78
USP28-205ENST00000537706 U3KPZ7 1027 aaPredicted RBP10.21□□□□□ -0.78
USP28-205ENST00000537706 FRYQ5TBA9 3013 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 MAST4O15021 2626 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 CCDC69A6NI79 296 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 FAM86B1E9PN63 330 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 ASAP2O43150 1006 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 TRAPPC3O43617 180 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 CYP3A4P08684 503 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 FAM86B2P0C5J1 330 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 SRGAP2CP0DJJ0 459 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 HOXC13P31276 330 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 TRIP6Q15654 476 aaKnown RBP10.2□□□□□ -0.78
USP28-205ENST00000537706 WDR44Q5JSH3 913 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 CWC27Q6UX04 472 aaKnown RBP10.2□□□□□ -0.78
USP28-205ENST00000537706 LPCAT2Q7L5N7 544 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 RABEPKQ7Z6M1 372 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 KSR1Q8IVT5 923 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 TMEFF1Q8IYR6 380 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 SRBD1Q8N5C6 995 aaKnown RBP10.2□□□□□ -0.78
USP28-205ENST00000537706 RDM1Q8NG50 284 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 SLC7A3Q8WY07 619 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 ZSWIM3Q96MP5 696 aa10.2□□□□□ -0.78
USP28-205ENST00000537706 EIF2AQ9BY44 585 aaKnown RBP10.2□□□□□ -0.78
USP28-205ENST00000537706 DDX11L8A8MPP1 907 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 hCG_1984214I3L0E3 225 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 PLEKHA8P1O95397 391 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 PDE1AP54750 535 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 CFHR1Q03591 330 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 GFPT1Q06210 699 aaPredicted RBP10.19□□□□□ -0.78
USP28-205ENST00000537706 CASC1Q6TDU7 716 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 LRRC69Q6ZNQ3 347 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 SYT12Q8IV01 421 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 TMTC2Q8N394 836 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 ZNF713Q8N859 430 aaPredicted RBP10.19□□□□□ -0.78
USP28-205ENST00000537706 TSTD1Q8NFU3 115 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 ZNF461Q8TAF7 563 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 CEP76Q8TAP6 659 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 TCP11Q8WWU5 503 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 GTPBP2Q9BX10 602 aaKnown RBP10.19□□□□□ -0.78
USP28-205ENST00000537706 SENP2Q9HC62 589 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 OBP2AQ9NY56 170 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 HES2Q9Y543 173 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 SPEGQ15772 3267 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 COL4A2P08572 1712 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 IGLV3-22A0A075B6J6 115 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.19□□□□□ -0.78
USP28-205ENST00000537706 SMCO2A6NFE2 343 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 CASTOR2A6NHX0 329 aa10.19□□□□□ -0.78
USP28-205ENST00000537706 CHMP2AO43633 222 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms