RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 MTFR1Q15390 333 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 KYAT1Q16773 422 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 BTBD8Q5XKL5 378 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 SPATA21Q7Z572 469 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 KCNK16Q96T55 309 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 DDX50Q9BQ39 737 aaKnown RBP11.21□□□□□ -0.61
CLIP1-209ENST00000537178 SIK2Q9H0K1 926 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 TMEM245Q9H330 911 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 PIH1D3Q9NQM4 214 aaKnown RBP11.21□□□□□ -0.61
CLIP1-209ENST00000537178 PARVAQ9NVD7 372 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 ZSCAN32Q9NX65 697 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 FEM1BQ9UK73 627 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 FBXL5Q9UKA1 691 aa11.21□□□□□ -0.61
CLIP1-209ENST00000537178 LARGE1O95461 756 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 RALAP11233 206 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 NCAPHQ15003 741 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 SYDE1Q6ZW31 735 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-209ENST00000537178 PLD3Q8IV08 490 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 RUBCNQ92622 972 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 SLC7A5P2Q9GIP4 190 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 BSDC1Q9NW68 430 aaPredicted RBP11.21□□□□□ -0.62
CLIP1-209ENST00000537178 TCF3P15923 654 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 ATL2Q8NHH9 583 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 TNIP3Q96KP6 325 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 ZNF556Q9HAH1 456 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 ZNF302Q9NR11 478 aa11.21□□□□□ -0.62
CLIP1-209ENST00000537178 DEFA1P59665 94 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 DEFA3P59666 94 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 TTLL4Q14679 1199 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 DUOXA2Q1HG44 320 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 APPL2Q8NEU8 664 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 PLEKHA8Q96JA3 519 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 RANBP17Q9H2T7 1088 aaKnown RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 GOLPH3LQ9H4A5 285 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 PSD3Q9NYI0 1048 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 ABCB11O95342 1321 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 A0A1W2PQC6 194 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 SPDYE5A6NIY4 337 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 EIF3DO15371 548 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 ABCC6O95255 1503 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 SLC1A1P43005 524 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 ARSEP51690 589 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 NME3Q13232 169 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 ARID5BQ14865 1188 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 SPDYE7PQ495Y7 208 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 ZNF746Q6NUN9 644 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 DDX42Q86XP3 938 aaKnown RBP eCLIP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 BBS7Q8IWZ6 715 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 BTN2A2Q8WVV5 523 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 DTNBP1Q96EV8 351 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 TSPAN17Q96FV3 270 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 TRABDQ9H4I3 376 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 CCDC134Q9H6E4 229 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 KLC4Q9NSK0 619 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 MORC2Q9Y6X9 1032 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 IGSF1Q8N6C5 1336 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 APOL1O14791 398 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 PSMD3O43242 534 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 ATP9BO43861 1147 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 WBP4O75554 376 aaKnown RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 AGTP01019 485 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 PSMC5P62195 406 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 TADA1Q96BN2 335 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 PIDD1Q9HB75 910 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 FAM217BQ9NTX9 383 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 MPP6Q9NZW5 540 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 LZTS1Q9Y250 596 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 C3orf70A6NLC5 250 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 ARIH2O95376 493 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 VCAM1P19320 739 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 UBE3AQ05086 875 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 LAMB3Q13751 1172 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 PCYOX1LQ8NBM8 494 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 TMEM47Q9BQJ4 181 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 MRPL1Q9BYD6 325 aaKnown RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 PPCSQ9HAB8 311 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 TBC1D23Q9NUY8 699 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 TJP2Q9UDY2 1190 aa11.2□□□□□ -0.62
CLIP1-209ENST00000537178 ABT1Q9ULW3 272 aaKnown RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 CAB39Q9Y376 341 aaPredicted RBP11.2□□□□□ -0.62
CLIP1-209ENST00000537178 CEMIPQ8WUJ3 1361 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 TTC26A0AVF1 554 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 CDH16O75309 829 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 SEC24DO94855 1032 aaPredicted RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 FDX1P10109 184 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 RANBP1P43487 201 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 PKN3Q6P5Z2 889 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 BTNL9Q6UXG8 535 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 RHPN2Q8IUC4 686 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 GLYCTKQ8IVS8 523 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 GSPT2Q8IYD1 628 aaKnown RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 PPHLN1Q8NEY8 458 aaKnown RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 INPP5DQ92835 1189 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 OPTNQ96CV9 577 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 UNC45AQ9H3U1 944 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 PPP1R37O75864 691 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 KCNQ4P56696 695 aa11.19□□□□□ -0.62
CLIP1-209ENST00000537178 EIF3EP60228 445 aaKnown RBP11.19□□□□□ -0.62
CLIP1-209ENST00000537178 NBPF20Q3BBV1 942 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms