RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 OTOL1A6NHN0 477 aaPredicted RBP4.3□□□□□ -1.72
CSMD3-210ENST00000534172 TPP1O14773 563 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 CDC14BO60729 498 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 INHBBP09529 407 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 IL12RB1P42701 662 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 GZMKP49863 264 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 SP140Q13342 867 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 RIN1Q13671 783 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 NOMO1Q15155 1222 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 METTL24Q5JXM2 366 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 ANKRD35Q8N283 1001 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 FAM43AQ8N2R8 423 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 TTC9BQ8N6N2 239 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 SYT8Q8NBV8 401 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 ZBTB34Q8NCN2 500 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 MYRIPQ8NFW9 859 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 TNIP3Q96KP6 325 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 RPL10LQ96L21 214 aaKnown RBP4.3□□□□□ -1.72
CSMD3-210ENST00000534172 UHRF1Q96T88 793 aaPredicted RBP4.3□□□□□ -1.72
CSMD3-210ENST00000534172 NAA15Q9BXJ9 866 aaKnown RBP4.3□□□□□ -1.72
CSMD3-210ENST00000534172 GTPBP4Q9BZE4 634 aaKnown RBP4.3□□□□□ -1.72
CSMD3-210ENST00000534172 TMEM140Q9NV12 185 aa4.3□□□□□ -1.72
CSMD3-210ENST00000534172 GRIN2AQ12879 1464 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 NHSL1Q5SYE7 1610 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 TBX3O15119 743 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 ADAM8P78325 824 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 MRPL49Q13405 166 aaKnown RBP4.29□□□□□ -1.72
CSMD3-210ENST00000534172 NFIXQ14938 502 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 TBR1Q16650 682 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 ATAT1Q5SQI0 421 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 ANO1Q5XXA6 986 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 LILRA6Q6PI73 481 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 FAM111BQ6SJ93 734 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 SRLQ86TD4 932 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 TAX1BP1Q86VP1 789 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 OR5M3Q8NGP4 307 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 CXorf38Q8TB03 319 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 HPS3Q969F9 1004 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 FAM89AQ96GI7 184 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 KRTAP4-8Q9BYQ9 185 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 ENKD1Q9H0I2 346 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 NLRC4Q9NPP4 1024 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 KMT5AQ9NQR1 393 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 TLR9Q9NR96 1032 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 CALCOCO1Q9P1Z2 691 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 NIPSNAP3AQ9UFN0 247 aaPredicted RBP4.29□□□□□ -1.72
CSMD3-210ENST00000534172 SETBP1Q9Y6X0 1596 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 NPHP1O15259 732 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 MFAP3LO75121 409 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 IPO13O94829 963 aaKnown RBP4.29□□□□□ -1.72
CSMD3-210ENST00000534172 ITGB3P05106 788 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 POU2F2P09086 479 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 CCT2P78371 535 aaKnown RBP4.29□□□□□ -1.72
CSMD3-210ENST00000534172 RAB39AQ14964 217 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 UAP1L1Q3KQV9 507 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 TBC1D10BQ4KMP7 808 aaPredicted RBP4.29□□□□□ -1.72
CSMD3-210ENST00000534172 XRRA1Q6P2D8 792 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 ABHD15Q6UXT9 468 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 TTLL10Q6ZVT0 673 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 SKAP1Q86WV1 359 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 ZDHHC14Q8IZN3 488 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 DIS3LQ8TF46 1054 aaKnown RBP4.29□□□□□ -1.72
CSMD3-210ENST00000534172 FAM167AQ96KS9 214 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 SAMD11Q96NU1 681 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 ING3Q9NXR8 418 aa4.29□□□□□ -1.72
CSMD3-210ENST00000534172 KIAA0556O60303 1618 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 PJA2O43164 708 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 SLC5A1P13866 664 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 PTMSP20962 102 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FXR1P51114 621 aaKnown RBP eCLIP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 AK2P54819 239 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 POU5F1BQ06416 359 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 CHAF1AQ13111 956 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 LLGL1Q15334 1064 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FBLN7Q53RD9 439 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 C1orf228Q6PIY5 440 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 KRBA2Q6ZNG9 492 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 DOK3Q7L591 496 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 SRGAP1Q7Z6B7 1085 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FAM83AQ86UY5 434 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FAM193BQ96PV7 902 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 SLC2A13Q96QE2 648 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 GPHA2Q96T91 129 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 NAP1L4Q99733 375 aaKnown RBP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 NCDNQ9UBB6 729 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 TUBD1Q9UJT1 453 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 ZFR2Q9UPR6 939 aaKnown RBP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 HDAC5Q9UQL6 1122 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 DMTF1Q9Y222 760 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 SETD1BQ9UPS6 1966 aaKnown RBP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 ALKQ9UM73 1620 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 UBE2QL1A1L167 161 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 KLRG2A4D1S0 409 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-210ENST00000534172 B5MCH6 92 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 ZBED1O96006 694 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 FLT3LGP49771 235 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 CDC42EP1Q00587 391 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 PPP3CAQ08209 521 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 LMOD3Q0VAK6 560 aa4.28□□□□□ -1.72
CSMD3-210ENST00000534172 STK3Q13188 491 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms