RNA–Protein interactions for RNA: ENST00000533149.1

TRAPPC4-213, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 1,340 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-213ENST00000533149 NDRG2Q9UN36 371 aaKnown RBP12.5□□□□□ -0.41
TRAPPC4-213ENST00000533149 PCDHA7Q9UN72 937 aa12.5□□□□□ -0.41
TRAPPC4-213ENST00000533149 GOLGA6L4A6NEF3 574 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 PPP6R2O75170 966 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 KCNK5O95279 499 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 C8AP07357 584 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 POU2F2P09086 479 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 ITGA4P13612 1032 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 RPL17P18621 184 aaKnown RBP12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 MTERF2Q49AM1 385 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 NEK8Q86SG6 692 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 LONP2Q86WA8 852 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 NPAS3Q8IXF0 933 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 GPT2Q8TD30 523 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 JPH2Q9BR39 696 aaPredicted RBP12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 GPR62Q9BZJ7 368 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 LMAN1LQ9HAT1 526 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 GDE1Q9NZC3 331 aa12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 SEPT9Q9UHD8 586 aaPredicted RBP12.49□□□□□ -0.41
TRAPPC4-213ENST00000533149 ARL5CA6NH57 179 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 SHISA7A6NL88 538 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 CCL16O15467 120 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 BMP15O95972 392 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 MCM7P33993 719 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 JAK3P52333 1124 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 PTGDRQ13258 359 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 UVSSAQ2YD98 709 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 PABPC1LQ4VXU2 614 aaKnown RBP12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 PRR16Q569H4 304 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 XKR3Q5GH77 459 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 AXDND1Q5T1B0 1012 aaPredicted RBP12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 LRSAM1Q6UWE0 723 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 FAM160A2Q8N612 972 aaPredicted RBP12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 C4orf32Q8N8J7 132 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 FAM3CQ92520 227 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 ELSPBP1Q96BH3 223 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 GAD1Q99259 594 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 LSM14BQ9BX40 385 aaKnown RBP12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 IFT122Q9HBG6 1241 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 ADAM28Q9UKQ2 775 aa12.48□□□□□ -0.41
TRAPPC4-213ENST00000533149 CHURC1-FNTBB4DL54 471 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 F8W810 466 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 CCNT1O60563 726 aaKnown RBP12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 CUTAO60888 179 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 MAFO75444 373 aaPredicted RBP12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 MBD3O95983 291 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 ZNF806P0C7X5 589 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 HOXA11P31270 313 aaPredicted RBP12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 MLH1P40692 756 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 FNTBP49356 437 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 USP11P51784 963 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 SATB1Q01826 763 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 UGCGQ16739 394 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 UBXN11Q5T124 520 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 STPG1Q5TH74 334 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 ADALQ6DHV7 355 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 CEP68Q76N32 757 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 RTL10Q7L3V2 364 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 SRGAP1Q7Z6B7 1085 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 KSR1Q8IVT5 923 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 SPEM1Q8N4L4 309 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 KRI1Q8N9T8 703 aaKnown RBP12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 IRF7Q92985 503 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 LOXL4Q96JB6 756 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 CEP89Q96ST8 783 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 RIT2Q99578 217 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 PLA2G2FQ9BZM2 168 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 BRD9Q9H8M2 597 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 MRPS23Q9Y3D9 190 aaKnown RBP12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 IPPQ9Y573 584 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 MORC2Q9Y6X9 1032 aaPredicted RBP12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 RALGAPA1Q6GYQ0 2036 aa12.47□□□□□ -0.41
TRAPPC4-213ENST00000533149 SF3B1O75533 1304 aaKnown RBP eCLIP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 A0A1W2PQ27 194 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 A0A1W2PQ64 194 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 A0A1W2PQD8 194 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 GAS7O60861 476 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 TADA2AO75478 443 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 PAPSS2O95340 614 aaPredicted RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 SCNN1GP51170 649 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 ATP2C1P98194 919 aaPredicted RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 KLHL40Q2TBA0 621 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 PRSS55Q6UWB4 352 aaPredicted RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 HACE1Q8IYU2 909 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 SMG8Q8ND04 991 aaKnown RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 RDM1Q8NG50 284 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 CLIC6Q96NY7 704 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 NAP1L4Q99733 375 aaKnown RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 TRMT61BQ9BVS5 477 aaKnown RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 TMEM60Q9H2L4 133 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 TRPV5Q9NQA5 729 aa12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 DNMT3BQ9UBC3 853 aaKnown RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 FBXO2Q9UK22 296 aaPredicted RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 SRPRBQ9Y5M8 271 aaKnown RBP12.46□□□□□ -0.41
TRAPPC4-213ENST00000533149 CHMP2AO43633 222 aa12.45□□□□□ -0.42
TRAPPC4-213ENST00000533149 ERLIN2O94905 339 aa12.45□□□□□ -0.42
TRAPPC4-213ENST00000533149 TDP2O95551 362 aa12.45□□□□□ -0.42
TRAPPC4-213ENST00000533149 LIG1P18858 919 aa12.45□□□□□ -0.42
TRAPPC4-213ENST00000533149 CMA1P23946 247 aa12.45□□□□□ -0.42
TRAPPC4-213ENST00000533149 CIITAP33076 1130 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms