RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 GOLGA6L4A6NEF3 574 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 KLRC4O43908 158 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 PRPF6O94906 941 aaKnown RBP16.38■□□□□ 0.21
CPSF1-208ENST00000532560 ZNF202O95125 648 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 GARTP22102 1010 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 POU5F1Q01860 360 aaKnown RBP16.38■□□□□ 0.21
CPSF1-208ENST00000532560 TFF2Q03403 129 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 SOX4Q06945 474 aaPredicted RBP16.38■□□□□ 0.21
CPSF1-208ENST00000532560 ADAM15Q13444 863 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 ENOX2Q16206 610 aaKnown RBP16.38■□□□□ 0.21
CPSF1-208ENST00000532560 TPRNQ4KMQ1 711 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 RBM23Q86U06 439 aaKnown RBP16.38■□□□□ 0.21
CPSF1-208ENST00000532560 POMGNT1Q8WZA1 660 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 TSPAN18Q96SJ8 248 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 IGFLR1Q9H665 355 aa16.38■□□□□ 0.21
CPSF1-208ENST00000532560 RPF1Q9H9Y2 349 aaKnown RBP16.38■□□□□ 0.21
CPSF1-208ENST00000532560 CXCL14O95715 111 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 URODP06132 367 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 KCNA5P22460 613 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 LTBRP36941 435 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 GLUD2P49448 558 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 DSG1Q02413 1049 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 UPP1Q16831 310 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 BMT2Q1RMZ1 405 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 LEXMQ3ZCV2 418 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 CD302Q8IX05 232 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 GPR65Q8IYL9 337 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 RABGGTAQ92696 567 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 DDX27Q96GQ7 796 aaKnown RBP16.37■□□□□ 0.21
CPSF1-208ENST00000532560 CCDC34Q96HJ3 373 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 ASB2Q96Q27 587 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 GPR62Q9BZJ7 368 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 GOLGA2P5Q9HBQ8 144 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 CHST7Q9NS84 486 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 EXOC1Q9NV70 894 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 UNC80Q8N2C7 3258 aa16.37■□□□□ 0.21
CPSF1-208ENST00000532560 LACTBL1A8MY62 500 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 PER2O15055 1255 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 KIAA0391O15091 583 aaKnown RBP16.36■□□□□ 0.21
CPSF1-208ENST00000532560 LINC01565O15544 149 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 LILRB3O75022 631 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 TBX10O75333 385 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 TADA2AO75478 443 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 GLP2RO95838 553 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 PRR29P0C7W0 189 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 RPL9P32969 192 aaKnown RBP16.36■□□□□ 0.21
CPSF1-208ENST00000532560 CA8P35219 290 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 HOXD13P35453 343 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 ACOT2P49753 483 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 CLCNKBP51801 687 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 FAM160A1Q05DH4 1040 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 DPYDQ12882 1025 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 ELAVL2Q12926 359 aaKnown RBP16.36■□□□□ 0.21
CPSF1-208ENST00000532560 KCNC3Q14003 757 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 KMT5BQ4FZB7 885 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 TJAP1Q5JTD0 557 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 DCLRE1AQ6PJP8 1040 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 TMEM184AQ6ZMB5 413 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 FMR1NBQ8N0W7 255 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-208ENST00000532560 TMEM87AQ8NBN3 555 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 ZNF507Q8TCN5 953 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 SCFD1Q8WVM8 642 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 AUTS2Q8WXX7 1259 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 C18orf25Q96B23 403 aaPredicted RBP16.36■□□□□ 0.21
CPSF1-208ENST00000532560 MRPL17Q9NRX2 175 aaKnown RBP16.36■□□□□ 0.21
CPSF1-208ENST00000532560 SSX2IPQ9Y2D8 614 aa16.36■□□□□ 0.21
CPSF1-208ENST00000532560 PODXLO00592 558 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 XPOTO43592 962 aaKnown RBP16.35■□□□□ 0.21
CPSF1-208ENST00000532560 B3GAT3O94766 335 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 RPN1P04843 607 aaKnown RBP16.35■□□□□ 0.21
CPSF1-208ENST00000532560 CYP3A5P20815 502 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 NDUFV1P49821 464 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 PSMD2Q13200 908 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 ZBTB6Q15916 424 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 USP41Q3LFD5 358 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 KIAA0319Q5VV43 1072 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 KANK3Q6NY19 840 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 ARMCX5Q6P1M9 558 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 CRELD2Q6UXH1 353 aaPredicted RBP16.35■□□□□ 0.21
CPSF1-208ENST00000532560 EP400NLQ6ZTU2 488 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 TAS1R1Q7RTX1 841 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 C3orf58Q8NDZ4 430 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 ENGASEQ8NFI3 743 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 VN1R2Q8NFZ6 395 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 HASPINQ8TF76 798 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 KIF12Q96FN5 646 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 CBWD1Q9BRT8 395 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 ASB7Q9H672 318 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 SLC39A2Q9NP94 309 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 TUBGCP4Q9UGJ1 667 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 UBQLN1Q9UMX0 589 aaKnown RBP16.35■□□□□ 0.21
CPSF1-208ENST00000532560 DERAQ9Y315 318 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 ANK1P16157 1881 aa16.35■□□□□ 0.21
CPSF1-208ENST00000532560 H3BQ06 376 aaPredicted RBP16.34■□□□□ 0.21
CPSF1-208ENST00000532560 CLASP2O75122 1294 aaKnown RBP16.34■□□□□ 0.21
CPSF1-208ENST00000532560 IL18RAPO95256 599 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 LDHAP00338 332 aaKnown RBP16.34■□□□□ 0.21
CPSF1-208ENST00000532560 SRGAP2BP0DMP2 458 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 LRPAP1P30533 357 aa16.34■□□□□ 0.21
CPSF1-208ENST00000532560 SNRPFP62306 86 aaKnown RBP16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms