RNA–Protein interactions for RNA: ENST00000531042.5

CPSF1-205, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-205ENST00000531042 ATOH1Q92858 354 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-205ENST00000531042 NTPCRQ9BSD7 190 aaKnown RBP17.31■□□□□ 0.36
CPSF1-205ENST00000531042 FBXL21Q9UKT6 434 aa17.31■□□□□ 0.36
CPSF1-205ENST00000531042 MYH11P35749 1972 aa17.31■□□□□ 0.36
CPSF1-205ENST00000531042 DOCK6Q96HP0 2047 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 VWA3AA6NCI4 1184 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 H3BQV1 296 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 ABLIM1O14639 778 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 C8AP07357 584 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 MCF2P10911 925 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 HOXA9P31269 272 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 OR1D2P34982 312 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 SOX4Q06945 474 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-205ENST00000531042 PPM1LQ5SGD2 360 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 ARL6IP4Q66PJ3 421 aaKnown RBP17.3■□□□□ 0.36
CPSF1-205ENST00000531042 MPZL3Q6UWV2 235 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 GRASPQ7Z6J2 395 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-205ENST00000531042 SIX5Q8N196 739 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 ACAP3Q96P50 834 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 TCHPQ9BT92 498 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 MTRRQ9UBK8 725 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 WNT16Q9UBV4 365 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 CACNA1HO95180 2353 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 CITO14578 2027 aa17.3■□□□□ 0.36
CPSF1-205ENST00000531042 ANHXE9PGG2 379 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 I3L4J1 428 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 TRAPPC3O43617 180 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 CFHP08603 1231 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 PLS3P13797 630 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 KCNE1P15382 129 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 AOC1P19801 751 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 FSHRP23945 695 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 TKTP29401 623 aaKnown RBP17.29■□□□□ 0.36
CPSF1-205ENST00000531042 BRCC3P46736 316 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 RAD51AP2Q09MP3 1159 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 AXDND1Q5T1B0 1012 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-205ENST00000531042 RSPO2Q6UXX9 243 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-205ENST00000531042 TMEM161BQ8NDZ6 487 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 SPIRE2Q8WWL2 714 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 DDX27Q96GQ7 796 aaKnown RBP17.29■□□□□ 0.36
CPSF1-205ENST00000531042 ZBTB45Q96K62 511 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-205ENST00000531042 SNX27Q96L92 541 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 ZMAT2Q96NC0 199 aaKnown RBP17.29■□□□□ 0.36
CPSF1-205ENST00000531042 PLIN2Q99541 437 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 SLC38A7Q9NVC3 462 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 KCNG1Q9UIX4 513 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 BACE2Q9Y5Z0 518 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 CDY1Q9Y6F8 540 aa17.29■□□□□ 0.36
CPSF1-205ENST00000531042 ZFP37Q9Y6Q3 630 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-205ENST00000531042 CCL16O15467 120 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 PI15O43692 258 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 SRFP11831 508 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 MCM2P49736 904 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 SMTNP53814 917 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 SLC12A3P55017 1021 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 NTHL1P78549 312 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 STRN3Q13033 797 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 HTR4Q13639 388 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 UVSSAQ2YD98 709 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 ANKS3Q6ZW76 656 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 SLC7A14Q8TBB6 771 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 CDK5RAP3Q96JB5 506 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 UPF2Q9HAU5 1272 aaKnown RBP17.28■□□□□ 0.36
CPSF1-205ENST00000531042 KCND2Q9NZV8 630 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 CNTN3Q9P232 1028 aa17.28■□□□□ 0.36
CPSF1-205ENST00000531042 MYO15AQ9UKN7 3530 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 PDCD11Q14690 1871 aaKnown RBP17.27■□□□□ 0.36
CPSF1-205ENST00000531042 KRBA1A5PL33 1030 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 PODXLO00592 558 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 MEFVO15553 781 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-205ENST00000531042 XYLBO75191 536 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 TOM1L1O75674 476 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 POU2F2P09086 479 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 PLA2G4BP0C869 781 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 MAPTP10636 758 aaKnown RBP17.27■□□□□ 0.36
CPSF1-205ENST00000531042 HARSP12081 509 aaKnown RBP17.27■□□□□ 0.36
CPSF1-205ENST00000531042 TMEM119Q4V9L6 283 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 RTL10Q7L3V2 364 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 RTP3Q9BQQ7 232 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 POLIQ9UNA4 740 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 SMC3Q9UQE7 1217 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 NUMBLQ9Y6R0 609 aa17.27■□□□□ 0.36
CPSF1-205ENST00000531042 NPHP3-ACAD11A0A0J9YXS1 232 aa17.26■□□□□ 0.35
CPSF1-205ENST00000531042 PROB1E7EW31 1015 aa17.26■□□□□ 0.35
CPSF1-205ENST00000531042 RPL9P32969 192 aaKnown RBP17.26■□□□□ 0.35
CPSF1-205ENST00000531042 NOLC1Q14978 699 aaKnown RBP eCLIP17.26■□□□□ 0.35
CPSF1-205ENST00000531042 ARSHQ5FYA8 562 aa17.26■□□□□ 0.35
CPSF1-205ENST00000531042 LARP1BQ659C4 914 aaKnown RBP17.26■□□□□ 0.35
CPSF1-205ENST00000531042 ZPBP2Q6X784 338 aa17.26■□□□□ 0.35
CPSF1-205ENST00000531042 ST13P5Q8NFI4 369 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-205ENST00000531042 C18orf25Q96B23 403 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-205ENST00000531042 AK8Q96MA6 479 aa17.26■□□□□ 0.35
CPSF1-205ENST00000531042 ANKFY1Q9P2R3 1169 aa17.26■□□□□ 0.35
CPSF1-205ENST00000531042 CDH7Q9ULB5 785 aa17.26■□□□□ 0.35
CPSF1-205ENST00000531042 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-205ENST00000531042 NOTCH4Q99466 2003 aa17.26■□□□□ 0.35
CPSF1-205ENST00000531042 ZFHX2Q9C0A1 2572 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-205ENST00000531042 SLC26A4O43511 780 aa17.25■□□□□ 0.35
CPSF1-205ENST00000531042 TBC1D4O60343 1298 aa17.25■□□□□ 0.35
CPSF1-205ENST00000531042 GFRA3O60609 400 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms