RNA–Protein interactions for RNA: ENST00000531041.1

SF3B2-211, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 1 (best)

Gene SF3B2, Length 1,440 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-211ENST00000531041 TMC2Q8TDI7 906 aa18.36■□□□□ 0.53
SF3B2-211ENST00000531041 THAP9Q9H5L6 903 aa18.36■□□□□ 0.53
SF3B2-211ENST00000531041 SLC38A7Q9NVC3 462 aa18.36■□□□□ 0.53
SF3B2-211ENST00000531041 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.36■□□□□ 0.53
SF3B2-211ENST00000531041 SCN1AP35498 2009 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 IKBKBO14920 756 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 DDHD2O94830 711 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 MARSP56192 900 aaKnown RBP18.35■□□□□ 0.53
SF3B2-211ENST00000531041 CLDN10P78369 228 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 SMAD3P84022 425 aaKnown RBP18.35■□□□□ 0.53
SF3B2-211ENST00000531041 MYL5Q02045 173 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 SPAG1Q07617 926 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 DSC1Q08554 894 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 BFSP1Q12934 665 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 TMEM132DQ14C87 1099 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 RAB30Q15771 203 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 LRIT3Q3SXY7 679 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 FRMD5Q7Z6J6 570 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 USP37Q86T82 979 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 IRF2BP1Q8IU81 584 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 EFCAB13Q8IY85 973 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 FIBCD1Q8N539 461 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 PLEKHO2Q8TD55 490 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 KIF12Q96FN5 646 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 FNBP1Q96RU3 617 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 PBX4Q9BYU1 374 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 CWH43Q9H720 699 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 METTL14Q9HCE5 456 aaKnown RBP18.35■□□□□ 0.53
SF3B2-211ENST00000531041 ARMCX3Q9UH62 379 aaPredicted RBP18.35■□□□□ 0.53
SF3B2-211ENST00000531041 NFE2L3Q9Y4A8 694 aa18.35■□□□□ 0.53
SF3B2-211ENST00000531041 PLXNA4Q9HCM2 1894 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 LCHNA4D1U4 455 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 XPOTO43592 962 aaKnown RBP18.34■□□□□ 0.53
SF3B2-211ENST00000531041 NFICP08651 508 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 KRT13P13646 458 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 VAMP7P51809 220 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 TUSC3Q13454 348 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 ZNF280BQ86YH2 543 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 WDR49Q8IV35 697 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 CLP1Q92989 425 aaKnown RBP18.34■□□□□ 0.53
SF3B2-211ENST00000531041 CCDC127Q96BQ5 260 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 FAM193BQ96PV7 902 aaPredicted RBP18.34■□□□□ 0.53
SF3B2-211ENST00000531041 CGRRF1Q99675 332 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 NRDE2Q9H7Z3 1164 aa18.34■□□□□ 0.53
SF3B2-211ENST00000531041 UBQLN1Q9UMX0 589 aaKnown RBP18.34■□□□□ 0.53
SF3B2-211ENST00000531041 MRPL42Q9Y6G3 142 aaKnown RBP18.34■□□□□ 0.53
SF3B2-211ENST00000531041 TRIOBPQ9H2D6 2365 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 DLATP10515 647 aaKnown RBP18.33■□□□□ 0.53
SF3B2-211ENST00000531041 MYOGP15173 224 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 CYP3A5P20815 502 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 PBX2P40425 430 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 NCAPHQ15003 741 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 CCDC40Q4G0X9 1142 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 FAM114A1Q8IWE2 563 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 COLGALT2Q8IYK4 626 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 AOPEPQ8N6M6 819 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 CACTINQ8WUQ7 758 aaKnown RBP18.33■□□□□ 0.53
SF3B2-211ENST00000531041 C18orf25Q96B23 403 aaPredicted RBP18.33■□□□□ 0.53
SF3B2-211ENST00000531041 ANP32EQ9BTT0 268 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 TSPY26PQ9H489 355 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 INTS13Q9NVM9 706 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 HCSTQ9UBK5 93 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 MSRAQ9UJ68 235 aa18.33■□□□□ 0.53
SF3B2-211ENST00000531041 YBX2Q9Y2T7 364 aaKnown RBP18.33■□□□□ 0.53
SF3B2-211ENST00000531041 CARNS1A5YM72 827 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 LRRIQ3A6PVS8 624 aaPredicted RBP18.32■□□□□ 0.52
SF3B2-211ENST00000531041 SMTNL1A8MU46 457 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 B4GALT3O60512 393 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 CA3P07451 260 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 LINC00271P0C7V0 271 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 TNNI1P19237 187 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 DLG4P78352 724 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 SOX4Q06945 474 aaPredicted RBP18.32■□□□□ 0.52
SF3B2-211ENST00000531041 IQCB1Q15051 598 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 DUOXA2Q1HG44 320 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 C1orf220Q5T0J3 134 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 DHX40Q8IX18 779 aaKnown RBP18.32■□□□□ 0.52
SF3B2-211ENST00000531041 BEST2Q8NFU1 509 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 POP1Q99575 1024 aaKnown RBP18.32■□□□□ 0.52
SF3B2-211ENST00000531041 TMEM175Q9BSA9 504 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 SAMSN1Q9NSI8 373 aaKnown RBP18.32■□□□□ 0.52
SF3B2-211ENST00000531041 DNAJB4Q9UDY4 337 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 PTPRJQ12913 1337 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 LINC01553A4QN01 128 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 ZC3H11AO75152 810 aaKnown RBP eCLIP18.32■□□□□ 0.52
SF3B2-211ENST00000531041 LAG3P18627 525 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 LRPAP1P30533 357 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 AP3M2P53677 418 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 TFAMQ00059 246 aaKnown RBP18.32■□□□□ 0.52
SF3B2-211ENST00000531041 CDKAL1Q5VV42 579 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 TRIM59Q8IWR1 403 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 ZNF516Q92618 1163 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 ANKRD36BP1Q96IX9 119 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 CNOT6LQ96LI5 555 aaKnown RBP18.32■□□□□ 0.52
SF3B2-211ENST00000531041 UROC1Q96N76 676 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 CBX8Q9HC52 389 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 FANCLQ9NW38 375 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 TUBGCP4Q9UGJ1 667 aa18.32■□□□□ 0.52
SF3B2-211ENST00000531041 TULP1O00294 542 aaPredicted RBP18.31■□□□□ 0.52
SF3B2-211ENST00000531041 ALDH2P05091 517 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms